FC931172

Overview
NameFC931172
Unique NameFC931172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931172_ssr148 microsatellite FC931172_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15458 contig Ccv1_Contig15458:162..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 76/116 (65.52%), Postives = 90/116 (77.59%), Query Frame = 1
Query:  358 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILS 705
            M   CCF ++   +             + G++K+GFSLVKGKANHPMEDYHVA F+ +Q HELGLFAIYDGH+G++VPAYLQK LFSNILKE EFWVDP+RSI+KAYEKTDQAILS
Sbjct:    1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLFSNILKEGEFWVDPRRSIAKAYEKTDQAILS 116          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 82/117 (70.09%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  358 MDSLCCFNAS-YSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILS 705
            M  LCCF +S Y  +V            N G +KFG+SLVKGKANHPMEDYHV+KFV++ G+ELGLFAIYDGHLGE VPAYLQKHLFSNILKEE+F  DPQRSI  AYEKTDQAILS
Sbjct:    1 MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKIDGNELGLFAIYDGHLGERVPAYLQKHLFSNILKEEQFRYDPQRSIIAAYEKTDQAILS 117          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 67/116 (57.76%), Postives = 84/116 (72.41%), Query Frame = 1
Query:  358 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILS 705
            M  +CC + S +++V              G +K+GFSL+KGK+NH MEDYHVAKF    G+ELGLFAI+DGH G+ V AYLQKHLFSNILK+ EF VDP+R+I+KAYE TDQ IL+
Sbjct:    1 MPKICC-SRSATQVVVAQKSNSGKGRNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFLVDPRRAIAKAYENTDQKILA 115          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 69/118 (58.47%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  358 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVK--FGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILS 705
            M   CCF A  S+                G VK  +GF LV+G  NHPMEDYHVA+  + +G+ELGLFAI+DGHLG+TVPAYLQK+LF+NIL EEEF   P R+I KAYEKTDQAILS
Sbjct:    1 MSRFCCFGAGCSEFSGHASTSSGKGKGIQGQVKVSYGFYLVRGMTNHPMEDYHVAELAEEKGNELGLFAIFDGHLGDTVPAYLQKNLFANILNEEEFLTQPDRAIIKAYEKTDQAILS 118          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query:  451 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            +  GF  VKGK++HPMEDY V++F +L+GHELGLFAI+DGHLG  V  YLQ +LF NILKE++FW D + +I  AY  TD  IL
Sbjct:   34 ITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTENAIRNAYRSTDAVIL 117          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  451 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            VK G+ LVKGK+NHPMEDY VA++ Q   H+LGLFAI+DGHLG TVP +L+ HLF NILK+ EF  +PQ +I  AY+ TD  IL
Sbjct:   37 VKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLFDNILKQPEFLSNPQAAIRNAYQLTDAKIL 120          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  451 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            V  GF LV+GK+ H MEDYHVA++   + HELGLFAI+DGHLG++VP+YL+ +LF NILKE  FW +PQ +I  AY  T++ IL
Sbjct:   69 VTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAYRSTNKYIL 152          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 1
Query:  451 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            +  G+  VKGKA HPMEDY V++F ++ GH+LGLFAI+DGHLG  V  YLQ +LF NILKE++FW D + +I  AY  TD  IL
Sbjct:   30 IAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTKNAIRNAYISTDAVIL 113          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  451 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            +  GF LVKGKA H MEDY VAKF ++  +ELGLFAI+DGHL   +P YL  HLF NILKE  FW +P+++I KAY  TD  IL
Sbjct:   40 ITHGFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAIFDGHLSHEIPDYLCSHLFENILKEPNFWQEPEKAIKKAYYITDTTIL 123          
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  496 MEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            MED+ VA    ++GH LGL+AI+DGH G  V  YLQ HLF NIL + +FW +P+++I +AY+ TD  IL
Sbjct:    1 MEDFIVADTKTVKGHNLGLYAIFDGHSGSDVADYLQNHLFDNILSQPDFWRNPKKAIKRAYKSTDDYIL 69          
The following BLAST results are available for this feature:
BLAST of FC931172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
P2C09_ARATH1.150e-3965.52Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C10_ARATH1.502e-3970.09Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C17_ARATH1.505e-3157.76Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C41_ORYSJ3.353e-3158.47Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C58_ARATH6.773e-2459.52Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C62_ORYSJ2.574e-2361.90Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C44_ORYSJ7.488e-2358.33Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C20_ARATH1.277e-2257.14Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C39_ARATH2.845e-2259.52Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C28_ARATH7.505e-1552.17Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34102C04EF PostHarvP1 Citrus clementina cDNA clone C34102C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931172 ID=FC931172; Name=FC931172; organism=Citrus clementina; type=EST; length=705bp
TCTCCTTTCAAAAAGGTTTCAAATCTTCTCCTCTCTCCCTCTTTTTTTTT
TTTCCCCCCCTTTCTAATCTCTGTTTATAATAATCTATCTCTTTATTCAA
TTGCTTGCACAAACTAATAAACACAAATTATATTAGAAAAAAAAGAGGAA
GAAGAAGAAACATCAAAAACCCCCCACGGAACAAAGATCACCAACAAGGA
GCATCAGTTGATTTTTAGCTTTGAATTGATCAACGAGAGATTGAGAATTC
TGGGAGCTGGGCTTGATTTAAAATTTTGGAGTAGAGTTGTTTACCAAGAG
TTTGATGTTGAAATTTTAGTTGAATTAGTTGGAACTGCTTTGCTGAATTT
TTATTTTATGGATAGCTTATGCTGCTTTAATGCTTCGTACTCGAAGCTTG
TGGGAGGACGCTCGTCATCTACTGGTAAGGGGAGAAGCAATGTTGGATTA
GTCAAGTTTGGTTTCAGCTTGGTAAAAGGGAAAGCTAATCATCCCATGGA
GGATTATCATGTTGCAAAATTTGTGCAACTTCAAGGTCATGAATTAGGGT
TGTTTGCTATTTATGACGGCCATTTGGGAGAAACTGTGCCTGCCTACCTA
CAAAAGCATTTGTTTTCCAACATCCTAAAGGAGGAAGAGTTTTGGGTTGA
CCCCCAGAGATCTATCTCTAAAGCTTATGAGAAGACAGACCAAGCAATTC
TCTCA
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