FC931182

Overview
NameFC931182
Unique NameFC931182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931182 vs. ExPASy Swiss-Prot
Match: TTC33_DANRE (Tetratricopeptide repeat protein 33 OS=Danio rerio GN=ttc33 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 61/177 (34.46%), Postives = 92/177 (51.98%), Query Frame = 2
Query:   98 WNKNKGNK--KRSLQQFPNLPFDQQDQERGLSGTELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA-RDDRQTALHLVKRRKQL 619
            W +  G +  K+++QQF        + E    G +              D    +   + +G  LAE  +  EAL KW+ A+ L PE+AVL+E K+QVL+ LG+ + A+++A  AT L   W EAW TLGRAQL+ GE + A+ SF+ AL + P       +D   AL L + ++ L
Sbjct:    6 WKRKVGERVSKQTVQQFEQDSEQADEDEVEREGVDWLHVIKRKREVLLEDCAAKSKRLKEEGALLAEQDRNWEALKKWDEAVQLTPEDAVLYEMKSQVLITLGEVFLAVQSAEMATRLRPIWWEAWQTLGRAQLSLGEVELAVRSFQVALHLHPSERPLWEEDLNWALKLRENQQSL 182          
BLAST of FC931182 vs. ExPASy Swiss-Prot
Match: TTC33_MOUSE (Tetratricopeptide repeat protein 33 OS=Mus musculus GN=Ttc33 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 64/175 (36.57%), Postives = 94/175 (53.71%), Query Frame = 2
Query:   98 WNKNKGNK--KRSLQQFPNLPFDQQDQERGLSGTELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA-RDDRQTALHLVKRRK 613
            W +  G K  K + QQF     D++D      G  L+ +    E  +    KQ +   + +G  LAE+ +++EA+ KW+ AL L P +A L+E K+QVLL L + + A+ AA  A +      EAW TLGRAQL  GE   AI SF+ AL I P + E  ++D   A  L +++K
Sbjct:    6 WKRRIGEKVSKATSQQFEAEAADEKDAAENEDGNWLQASKRRKETLQE-GCKQRSQQLKDEGAQLAENKRYKEAIQKWDEALQLTPGDATLYEMKSQVLLSLHEMFPAVHAAEMAVKRNPHSWEAWQTLGRAQLGLGEIVLAIRSFQIALHIYPMNPELWKEDLSWARKLQEQQK 179          
BLAST of FC931182 vs. ExPASy Swiss-Prot
Match: TTC33_XENLA (Tetratricopeptide repeat protein 33 OS=Xenopus laevis GN=ttc33 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  272 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 565
            +G  LAEDG+ +EAL KW+ A+ L P +A L+E KAQVL+ + + + A++AA  A +    + EAW TLGRAQL+ GE   AI SF+  L I P + E
Sbjct:   65 EGGLLAEDGRQKEALTKWDEAIQLTPGDAALYEMKAQVLMGVHEIFPAVQAAETAVQRNPHFVEAWQTLGRAQLSLGEITMAIRSFQIGLHICPANTE 162          
BLAST of FC931182 vs. ExPASy Swiss-Prot
Match: TTC33_HUMAN (Tetratricopeptide repeat protein 33 OS=Homo sapiens GN=TTC33 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 63/183 (34.43%), Postives = 95/183 (51.91%), Query Frame = 2
Query:   98 WNKNKGNK--KRSLQQFPNLPFDQQDQERGLSGTELEKNDDNNEHQEPFDAKQLALS--------FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA-RDDRQTALHLVKRRK 613
            W +  G K  K + QQF     D++D         +  ND+ N        K++ L          + +G +LAE+ ++REA+ KW+ AL L P +A L+E K+QVL+ L + + A+ AA  A +      E+W TLGRAQL  GE   AI SF+ AL I P + E  ++D   A  L +++K
Sbjct:    6 WKRKIGEKVSKVTSQQFEAEAADEKD---------VVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQK 179          
The following BLAST results are available for this feature:
BLAST of FC931182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TTC33_DANRE3.720e-1934.46Tetratricopeptide repeat protein 33 OS=Danio rerio... [more]
TTC33_MOUSE6.345e-1936.57Tetratricopeptide repeat protein 33 OS=Mus musculu... [more]
TTC33_XENLA1.728e-1646.94Tetratricopeptide repeat protein 33 OS=Xenopus lae... [more]
TTC33_HUMAN2.947e-1634.43Tetratricopeptide repeat protein 33 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionC34102D02EF PostHarvP1 Citrus clementina cDNA clone C34102D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931182 ID=FC931182; Name=FC931182; organism=Citrus clementina; type=EST; length=695bp
GATTGCAATGGCTGAGGTACAACTTTCTAACTGTGGGTGGTTTTGTCCCG
AGAAATTGAGAAAGTAGGGGGAGAGGCGGAGAGAGATGAAATTGACGTGG
AACAAAAACAAGGGCAACAAGAAGCGGTCACTGCAGCAATTCCCAAATCT
TCCTTTTGACCAACAAGACCAAGAGCGTGGATTAAGTGGTACAGAGCTCG
AAAAGAACGATGATAATAACGAACATCAAGAGCCCTTCGACGCTAAACAA
CTTGCCCTATCATTCGAAGCCCAAGGCAATAACCTTGCCGAGGATGGGAA
ATTCCGGGAAGCACTTGGAAAGTGGGAGGCTGCTCTTAATTTGAGGCCTG
AAAATGCGGTCTTGCATGAGCAGAAAGCACAAGTTTTATTAGAACTTGGG
GATGCGTGGAATGCATTGAAGGCAGCTACTCGAGCTACTGAATTGGAACA
ATCATGGGCAGAGGCATGGATAACTCTAGGTAGGGCACAGTTAAACTTTG
GGGAGCCTGATAAAGCAATCGAAAGCTTTGAGAGGGCATTAGCTATCAAG
CCTGATTCTGAGGAGGCTCGAGATGACAGACAGACTGCATTACATCTTGT
CAAGAGGAGGAAGCAGCTTCATTTGTCTGGCTTGAGTAAATGATGCAACC
GTTTTGTGGTTGGGGAACAGACAGAAGTCTCCTGAAGCTGTGAGA
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