FC931185

Overview
NameFC931185
Unique NameFC931185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig214 contig Ccv1_Contig214:28..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_TOBAC (Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 8.504e-84
Identity = 152/202 (75.25%), Postives = 174/202 (86.14%), Query Frame = 1
Query:   25 SSISAISNFPLYXXXXXXXXXRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            SSIS  S              R + C+ GGTVAEPK ++  +P+LL AVRG++VERPPVWLMRQAGRYMKSYQ++CEKYP FR+RSENVDLVVEISLQPW VF+PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDP+ T A+V++VREF PE+SVPYVG+ALTILR+EVNN+AAVLGFVGAPFTLASYVVEGGSSK+F+K
Sbjct:    9 SSISPSSKSAFTSPSNFNLNPRLICCSAGGTVAEPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTK 210          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP2_ORYSJ (Uroporphyrinogen decarboxylase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0337600 PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.650e-77
Identity = 145/181 (80.11%), Postives = 160/181 (88.40%), Query Frame = 1
Query:   94 VRC-AVGGTVAEPKNVSVAE-PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            VRC AVG  +AE   V  AE P+L+ A++G  VERPPVWLMRQAGRYMKSYQ++CE++PSFRERSENVDLVVEISLQPW VFKPDGVILFSDILTPL GMNIPFDI+KGKGPVIFDP+ T A V++VREF PEE VPYVG+AL ILREEVNNEAAVLGFVGAPFTLASY VEGGSSK+FSK
Sbjct:   29 VRCSAVGEVMAETAAVGTAEEPLLVSAIKGRKVERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSK 209          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP2_ARATH (Uroporphyrinogen decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=At2g40490 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.520e-77
Identity = 141/182 (77.47%), Postives = 161/182 (88.46%), Query Frame = 1
Query:   88 RYVRCAVGGTVAEPKNVSV-AEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            R VRC+V GT    + VS  +EP+LL+AV+GE V+RPPVWLMRQAGRYMKSYQ +CEKYPSFR+RSEN DLVVEISLQPW VFKPDGVILFSDILTPLSGMNIPFDI+KGKGP+IF+P  + A+V QVREF PEESVPYVG+AL  LR EVNNEAAVLGFVGAPFTL+SYV+EGGSSK+F++
Sbjct:   32 RIVRCSVEGTTVTERKVSATSEPLLLRAVKGEVVDRPPVWLMRQAGRYMKSYQTLCEKYPSFRDRSENADLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPEESVPYVGEALRRLRNEVNNEAAVLGFVGAPFTLSSYVIEGGSSKNFTQ 213          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_MAIZE (Uroporphyrinogen decarboxylase, chloroplastic OS=Zea mays GN=LES22 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.137e-70
Identity = 127/150 (84.67%), Postives = 140/150 (93.33%), Query Frame = 1
Query:  178 EDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            E+VERPPVWLMRQAGRYMKSYQ++CE+YPSFRERSENVDLVVEISLQPW VFKPDGVILFSDILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL ILR+EV NEAAVLGFVGAPFTLASY VEGGSSK+F+
Sbjct:   62 EEVERPPVWLMRQAGRYMKSYQLLCERYPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNILRQEVKNEAAVLGFVGAPFTLASYCVEGGSSKNFT 211          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_HORVU (Uroporphyrinogen decarboxylase (Fragment) OS=Hordeum vulgare GN=DCUP PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.009e-68
Identity = 127/149 (85.23%), Postives = 136/149 (91.28%), Query Frame = 1
Query:  184 VERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            VERPPVWLMRQAGRYMKSYQ +CEKYP FRERSENVDLVVEISLQPW VFKPDGVILFSDILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL +LR EV NEAAVLGFVGAPFTLASY VEGGSSK+FSK
Sbjct:    1 VERPPVWLMRQAGRYMKSYQNLCEKYPLFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNLLRGEVKNEAAVLGFVGAPFTLASYCVEGGSSKNFSK 149          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_SYNP2 (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemE PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.237e-58
Identity = 106/159 (66.67%), Postives = 130/159 (81.76%), Query Frame = 1
Query:  151 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            P+LL+A RGE VER PVW+MRQAGRYMK Y+ + EKYPSFRERSEN DL +EISLQPWH F+PDGVI+FSDILTPL GM IPFDII+ KGP+I +PI T A+VD +  FDP ES+P++   L  LR+EV N + VLGFVGAP+TLA+Y +EG SSK+++
Sbjct:    8 PLLLRAARGEKVERTPVWMMRQAGRYMKIYRDLREKYPSFRERSENPDLAIEISLQPWHAFQPDGVIMFSDILTPLPGMGIPFDIIESKGPIIENPIRTQAQVDAMTPFDPAESLPFIKTILGTLRQEVGNASTVLGFVGAPWTLAAYAIEGKSSKNYA 166          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_SYNSC (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain CC9605) GN=hemE PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.109e-58
Identity = 110/159 (69.18%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  151 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP+H FKPDGVILFSDILTPL GM I FDII+ KGP I DPI + A+VD +R  +P ES+P+VG+ L  LR+ V NEAAVLGFVGAP+TLA+YVVEG SSK+++
Sbjct:    6 PLLLRAARGESVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPFHAFKPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRSMAQVDALRPLNPSESMPFVGEVLGRLRQSVGNEAAVLGFVGAPWTLAAYVVEGKSSKNYA 164          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_SYNPX (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain WH8102) GN=hemE PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.046e-57
Identity = 109/159 (68.55%), Postives = 131/159 (82.39%), Query Frame = 1
Query:  151 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP+H FKPDGVILFSDILTPL GM I FDII+ KGP I DPI +  +V+ +R  +P ES+P+VG+ L  LRE V NEAAVLGFVGAP+TLA+YVVEG SSK+++
Sbjct:    6 PLLLRAARGEAVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPFHAFKPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRSMDQVNALRPLNPSESMPFVGEVLGRLRESVGNEAAVLGFVGAPWTLAAYVVEGKSSKNYA 164          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_SYNPW (Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain WH7803) GN=hemE PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.978e-57
Identity = 109/159 (68.55%), Postives = 131/159 (82.39%), Query Frame = 1
Query:  151 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            P+LL+A RGE VERPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL  EIS+QP++ FKPDGVILFSDILTPL GM I FDII+ KGP I DPI T A+VD +   +P ES+P+VG+ L  LR+ V NEAAVLGFVGAP+TLA+YVVEG SSK+++
Sbjct:    6 PLLLRAARGEAVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQPFNAFKPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRTMAQVDALHPLNPAESMPFVGEVLGRLRQSVGNEAAVLGFVGAPWTLAAYVVEGKSSKNYA 164          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_CYAA5 (Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain ATCC 51142) GN=hemE PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.785e-57
Identity = 102/159 (64.15%), Postives = 129/159 (81.13%), Query Frame = 1
Query:  151 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            P LL+A RGE ++RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL +EISLQPW  F+PDGVI+FSDILTPL GM IPFDI++ KGPVI  PI T  +VD +R  DPEES+P++   L  LR+EV N++ VLGFVG+P+TLA+Y +EG SSK+++
Sbjct:    8 PYLLRAARGEILDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENPDLAIEISLQPWRAFQPDGVIMFSDILTPLPGMGIPFDIVESKGPVIDPPIRTKEQVDNLRPLDPEESLPFIKTILQSLRQEVGNQSTVLGFVGSPWTLAAYAIEGKSSKNYA 166          
The following BLAST results are available for this feature:
BLAST of FC931185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_TOBAC8.504e-8475.25Uroporphyrinogen decarboxylase, chloroplastic OS=N... [more]
DCUP2_ORYSJ2.650e-7780.11Uroporphyrinogen decarboxylase 2, chloroplastic OS... [more]
DCUP2_ARATH4.520e-7777.47Uroporphyrinogen decarboxylase 2, chloroplastic OS... [more]
DCUP_MAIZE3.137e-7084.67Uroporphyrinogen decarboxylase, chloroplastic OS=Z... [more]
DCUP_HORVU1.009e-6885.23Uroporphyrinogen decarboxylase (Fragment) OS=Horde... [more]
DCUP_SYNP21.237e-5866.67Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_SYNSC2.109e-5869.18Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_SYNPX3.046e-5768.55Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_SYNPW3.978e-5768.55Uroporphyrinogen decarboxylase OS=Synechococcus sp... [more]
DCUP_CYAA56.785e-5764.15Uroporphyrinogen decarboxylase OS=Cyanothece sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC34102D05EF PostHarvP1 Citrus clementina cDNA clone C34102D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931185 ID=FC931185; Name=FC931185; organism=Citrus clementina; type=EST; length=649bp
GAAAGGCCCAACACAATGCCCTGCTCTTCAATTTCGGCTATTTCAAATTT
TCCACTGTATTCCTCTTCTCACTCCAATTCAAACTCCCGATATGTCCGCT
GCGCCGTCGGAGGGACTGTAGCGGAACCGAAAAATGTTTCTGTTGCCGAA
CCCATGTTGCTGAAAGCTGTTCGAGGAGAAGATGTTGAAAGACCTCCAGT
TTGGCTTATGAGGCAAGCAGGGAGGTACATGAAGAGTTATCAAATCATCT
GCGAGAAGTATCCTTCATTTCGTGAAAGATCAGAAAATGTTGATCTTGTT
GTGGAAATTTCTCTTCAGCCGTGGCATGTTTTTAAGCCGGATGGTGTCAT
TTTATTCTCAGACATTTTAACTCCTCTTTCTGGGATGAATATACCTTTTG
ACATTATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGAT
GCAGAAGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATA
TGTTGGGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAG
CAGTTCTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTT
GAGGGTGGTTCATCGAAGCACTTCAGCAAAAAAAGCGACTAGCTTTCTC
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