FC931194

Overview
NameFC931194
Unique NameFC931194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931194_ssr276 microsatellite FC931194_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10598 contig Ccv1_Contig10598:36..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: A1CF_MOUSE (APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  446 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 661
            P  G E+FIG LP+D  E++L  LCE IG ++E+RLM D  +G ++G+AFV+F +K+ AK AI +L++ E++
Sbjct:   52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIR 122          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: A1CF_RAT (APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 33/72 (45.83%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  446 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 661
            P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K+ AK AI +L++ E++
Sbjct:   52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIR 122          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: A1CF_HUMAN (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  440 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 661
            A P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K  AK AI +L++ E++
Sbjct:   50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIR 122          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: A1CF_PONAB (APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  440 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 661
            A P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K  AK AI +L++ E++
Sbjct:   50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIR 122          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 30/85 (35.29%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  413 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 667
            +KD+ ++   +  N + V++  + +D +EE+ RDL E  G++    L +D ESG+S+GF FV+F S + A  A++ L+ K+ KG+
Sbjct:  221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQ 305          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  407 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 667
            +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  407 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 667
            +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  407 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 667
            +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK
Sbjct:  174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  407 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 667
            +  K++ A+L A       V+I    +D  +E L+DL    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK
Sbjct:  174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259          
BLAST of FC931194 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  407 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 667
            + +K++ A+L A     + V+I    +D  +E L++L    G    V++M D ESG+SKGF FVSF   E A+KA+DE++ KEL GK
Sbjct:  174 KSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259          
The following BLAST results are available for this feature:
BLAST of FC931194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
A1CF_MOUSE3.286e-1247.22APOBEC1 complementation factor OS=Mus musculus GN=... [more]
A1CF_RAT5.606e-1245.83APOBEC1 complementation factor OS=Rattus norvegicu... [more]
A1CF_HUMAN1.249e-1145.95APOBEC1 complementation factor OS=Homo sapiens GN=... [more]
A1CF_PONAB1.631e-1145.95APOBEC1 complementation factor OS=Pongo abelii GN=... [more]
PABP_COCIM3.633e-1135.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB3.633e-1142.53Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN3.633e-1142.53Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN3.633e-1142.53Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP3_HUMAN6.198e-1142.53Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP1_MOUSE6.198e-1141.38Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34102E04EF PostHarvP1 Citrus clementina cDNA clone C34102E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931194 ID=FC931194; Name=FC931194; organism=Citrus clementina; type=EST; length=686bp
GGAGAGAGTGAGGTCGGATAATCCATACGGACACGGAAGAAAACAGAAAA
ACAGAAACAGAGAAAGCAAAAACAACACACAAAACACAAAATAATTGGGT
GCTGTTGTTGGATGATAAGTGCCAGATCTTGAAACAGTCATGGCTGAGAG
CACGGAAGTTGAGGACCGAGTGGATCTTGAGGAGGACAATTACATGGAAG
AGATGGATGATGATGTCGAAGAGCAAGTAGAGGAAGATCCAGAAGAAGAA
GGTGGGGATGGAAATTTTGAAGACAATGATGATGATGAAGAATATGATCG
TTCAAAAGCTGGGGCTAGTGAGAAAGATCAGTCAGCAGAAGCAAATAGAA
ATGATGATGATACTCCACATGTGGAAGAGGAAGAAAAGCCCACTGCTTCT
GTTGGTGAAGACGAGAAAGATAAGCATGCCCAGCTTCTTGCCCTCCCTCC
TAATGGCTCAGAAGTTTTCATTGGTGGGCTTCCAAAGGATGCATCGGAAG
AGGACTTGAGGGATCTGTGTGAACCAATAGGCGATGTTTTTGAGGTGAGG
TTAATGAAAGACAAGGAGAGTGGAGAAAGCAAGGGTTTTGCTTTTGTATC
ATTCAGATCAAAAGAGTTTGCCAAGAAGGCCATCGATGAGTTACACAGTA
AAGAACTTAAGGGTAAAACAATNAGGTGTTCACTGT
back to top