FC931212

Overview
NameFC931212
Unique NameFC931212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9824 contig Ccv1_Contig9824:803..1439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.239e-31
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 196
            INFDFPKN+ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYC+
Sbjct:  441 INFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ 505          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.583e-29
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 196
            INFDFPK +ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP IDQAIYC+
Sbjct:  444 INFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIYCQ 508          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.755e-29
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 196
            INFDFPK++ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP ID+AIYC+
Sbjct:  434 INFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDRAIYCQ 498          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 9.817e-29
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 196
            INFDFPK SETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK IPP ID A+YC+
Sbjct:  457 INFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKTIPPQIDLAVYCQ 521          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 53/63 (84.13%), Postives = 61/63 (96.83%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPK+SETYLHR+GRSGRFGHLGLA+NLITYEDRF+LY+IEQELGTEIK IPP ID+++Y
Sbjct:  359 INFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELGTEIKPIPPVIDKSLY 421          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 196
            INFDFP+ SE+YLHRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP +IDQAIYC+
Sbjct:  434 INFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAIYCQ 498          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.042e-25
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 196
            INFDFP+ SE+YLHRVGRSGRFGHLGLAVNL+TYEDRF +Y+ EQELGTEIK IP  ID+AIYC+
Sbjct:  464 INFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ 528          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DR+NLY+IEQELGTEI+ IPP ID+ +Y
Sbjct:  357 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLY 419          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 50/63 (79.37%), Postives = 59/63 (93.65%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  357 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 50/63 (79.37%), Postives = 59/63 (93.65%), Query Frame = 2
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  357 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
The following BLAST results are available for this feature:
BLAST of FC931212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RH8_ARATH1.239e-3196.92DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH8_ORYSJ2.583e-2992.31DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH6_ORYSJ5.755e-2990.77DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
RH12_ORYSJ9.817e-2990.77DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DDX6_DICDI4.560e-2684.13Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
RH12_ARATH5.956e-2681.54DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
RH6_ARATH5.042e-2580.00DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
DHH1_COCIM1.467e-2477.78ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]
DHH1_ASPNC1.467e-2479.37ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_ASPCL1.467e-2479.37ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionC34102F12EF PostHarvP1 Citrus clementina cDNA clone C34102F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931212 ID=FC931212; Name=FC931212; organism=Citrus clementina; type=EST; length=637bp
CATTAACTTTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTG
GTCGATCTGGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACT
TACGAGGACCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGA
AATTAAGCAGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGAT
TTATGGCCGGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCT
GAGGCTGTTGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCATTTTAT
GAACTGGTTATGTGTGTTGGTGGAAGACTTGCAGCTGGTGCTGTGCGATT
AACCCTGGATCCTTTTTCTCTCTTGGTTTCTGGATTTTCATAGTTCTAAA
TATTTATCAGGATTGTAGAAGAGTTTTAGAACGGTTTATAAATCCCAGAT
AGAAGCTGGGTCCAGTTCACAGCTGCGTTTGCTTTCATGGATGGACTGGT
TTGGTACTTGTATGCCCATGTTCTAGTATGATTTACTGCTGAATTTGGAG
GTTGTACTTTGCAAAAAATTCGCCTTTTTTCTTTTGAACATCTTTAAAAT
TCCTTGGTGCATTTTCTTANGTTCACTCTCGCAGAAC
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