FC931293

Overview
NameFC931293
Unique NameFC931293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: UCKC_DICDI (Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.504e-50
Identity = 92/183 (50.27%), Postives = 139/183 (75.96%), Query Frame = 3
Query:  156 QVQLVKKKDSD-RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHG-IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIH 695
            +++++ + D D RY I P++DTLSF+KGFF+ +RA Q + +K+ G +I+VG+AGPSGAGKT   +K+++ +P   +I++DNY DSSR II+ N+DD RL D++ L +NI  L   K   +P+YDF  S R  Y+ ++ P S++++IEGIYAL E++R L+DLRVS++GGVHFDL+KR+FRD+H
Sbjct:    5 EIEVIPRPDKDDRYTIKPLKDTLSFDKGFFLAVRAIQSIRKKSQGSVIVVGIAGPSGAGKTSIAQKIVSVLPKSILISLDNYLDSSRQIIEENYDDYRLVDFELLKKNISDLISNKPTDLPLYDFTKSGRYAYKRVQPPESKVLLIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVH 187          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: UCKD_DICDI (Uridine-cytidine kinase D OS=Dictyostelium discoideum GN=udkD PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29
Identity = 72/201 (35.82%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  102 DTSSGADSPRRRPGLLRDQVQLVKKKDSDR--YEIVPIEDTLSFEKGFFIVIRACQLLAQKN-HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            D S  +DS   R     +++ ++ + +S    +EI  +   LSF++GFF   RA ++L +K+   II +G+AGP GAGKT    K+ + +  + +I++ ++     + D N+DDP L D+D ++  +  LKE K V +P I + K  SR    ++ + +S+++I+EG YALS ++RPL+D+ V++TGGVH DL+K + R I
Sbjct:   45 DQSIESDSSFTREKQFEEELDILGEINSKTGLFEIKQVPYQLSFDQGFFHACRAIEILTEKDPKRIICLGIAGPVGAGKTTLANKIGSLVNGV-IISLQDFVKLENVKDNNYDDPVLIDFDKVISTLNELKENKTVIIPKIVNRKMESR----SISLSTSKVIILEGAYALSARIRPLLDISVAITGGVHLDLIKSIMRGI 240          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAW (Uridine kinase OS=Staphylococcus aureus (strain MW2) GN=udk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAT (Uridine kinase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=udk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAS (Uridine kinase OS=Staphylococcus aureus (strain MSSA476) GN=udk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAR (Uridine kinase OS=Staphylococcus aureus (strain MRSA252) GN=udk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAN (Uridine kinase OS=Staphylococcus aureus (strain N315) GN=udk PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAM (Uridine kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=udk PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAE (Uridine kinase OS=Staphylococcus aureus (strain Newman) GN=udk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STAAC (Uridine kinase OS=Staphylococcus aureus (strain COL) GN=udk PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 49/141 (34.75%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++G+AG SG+GKT  T +++  +   S+A++  D Y  D   +     ++ N+D P   D D L+EN++ LK GKAV+VP YD+ S +R    T++     ++I+EGI+AL  K LR ++D+++ V       +++R+ RD
Sbjct:    6 IIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDI-TIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRD 145          
The following BLAST results are available for this feature:
BLAST of FC931293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
UCKC_DICDI4.504e-5050.27Uridine-cytidine kinase C OS=Dictyostelium discoid... [more]
UCKD_DICDI1.506e-2935.82Uridine-cytidine kinase D OS=Dictyostelium discoid... [more]
URK_STAAW5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain MW... [more]
URK_STAAT5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain US... [more]
URK_STAAS5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain MS... [more]
URK_STAAR5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain MR... [more]
URK_STAAN5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain N3... [more]
URK_STAAM5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain Mu... [more]
URK_STAAE5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain Ne... [more]
URK_STAAC5.027e-1734.75Uridine kinase OS=Staphylococcus aureus (strain CO... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103E12EF PostHarvP1 Citrus clementina cDNA clone C34103E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931293 ID=FC931293; Name=FC931293; organism=Citrus clementina; type=EST; length=739bp
GGTTCATCTTGATTCCTAAGAATTCACTGTTCCAAAAAAAGGAAAAAAAA
TCAAAGAAAAGCAAGGGAGGGAATATATATTGTGGAACTTATATGGCTCA
GGACACTTCTTCAGGTGCTGATTCACCTCGACGACGACCTGGTCTGTTGC
GAGATCAGGTTCAGTTGGTTAAGAAGAAGGACTCTGATCGCTATGAGATT
GTTCCTATAGAAGATACATTGTCATTTGAAAAAGGTTTTTTCATAGTAAT
TCGTGCATGCCAATTGTTGGCTCAAAAGAATCATGGGATAATATTAGTTG
GAGTAGCAGGTCCCTCCGGAGCTGGAAAGACTGTCTTCACTGAGAAGGTG
CTCAACTTTATGCCCAGTATTGCTGTGATAACCATGGACAACTACAACGA
TTCTAGTCGTATCATTGATGGCAACTTCGATGACCCGCGCTTGACAGATT
ATGACACACTGCTTGAAAACATTCGTGGTTTAAAGGAAGGGAAAGCTGTT
CAAGTCCCAATTTACGACTTCAAGTCTAGTTCTCGCATTGGTTACAGGAC
ACTTGAAGTCCCTAGCTCCCGCATTGTGATTATTGAAGGCATCTATGCCT
TAAGTGAAAAACTGCGGCCTTTGATAGATCTTCGTGTATCTGTTACGGGT
GGAGTTCATTTTGATCTCGTAAAGCGAGTTTTTCGTGACATTCACGTGTT
GGCCAGAGCCTGAAGAGATAATCATCAATATCTGAACGG
back to top