FC931370

Overview
NameFC931370
Unique NameFC931370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15318 contig Ccv1_Contig15318:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.908e-76
Identity = 146/192 (76.04%), Postives = 157/192 (81.77%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VRLGAN+++ERQPIGTAAQ  + KDY              TSWSFYRAGIAEF+ATFLFLYIS+LTVMGV KS++KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF               V  GYTKGDGLGAEI+GTFVLVYTVFSAT
Sbjct:    8 VRLGANRYSERQPIGTAAQGTEEKDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-EGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSAT 198          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 285.419 bits (729), Expect = 1.908e-76
Identity = 147/192 (76.56%), Postives = 155/192 (80.73%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VRLGANKF+ERQPIGTAAQ  D KDY               SWSFYRAGIAEF+ATFLFLYI+VLTVMGV  S +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF               VA GYTKGDGLGAEI+GTF+LVYTVFSAT
Sbjct:    8 VRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-KGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSAT 198          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 9.468e-76
Identity = 147/193 (76.17%), Postives = 155/193 (80.31%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQDG-KDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            V LGANKF ERQP+G AAQSQD  KDY              TSWSFYRAGIAEFIATFLFLYI+VLTVMGVV+ ++KC TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FYMVMQ LGAICGAGVVKGF               VA GYTKGDGLGAEI+GTF+LVYTVFSAT
Sbjct:    8 VSLGANKFPERQPLGIAAQSQDEPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSAT 200          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.615e-75
Identity = 145/192 (75.52%), Postives = 155/192 (80.73%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VRLGAN++TERQPIGTAAQ  + KDY              TSWSFYRAGIAEF+ATFLFLYIS+LTVMGV KS +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FYM MQCLGAICGAGVVKGF               V  GYTKGDGLGAEI+GTFVLVYTVFSAT
Sbjct:    8 VRLGANRYTERQPIGTAAQGAEEKDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVNKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQ-RGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSAT 198          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.598e-75
Identity = 144/193 (74.61%), Postives = 157/193 (81.35%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQ-SQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VRLGANKF+ERQPIGTAAQ + D KDY               SWSFYRAGIAEF+ATFLFLYI++LTVMGV KS +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFY++MQCLGA+CGAGVVKGF               VA GYTKGDGLGAEI+GTF+LVYTVFSAT
Sbjct:    8 VRLGANKFSERQPIGTAAQGAADDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQ-QGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSAT 199          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.015e-75
Identity = 145/196 (73.98%), Postives = 156/196 (79.59%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQS----QDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VRLGANKF+ERQPIGTAAQ      D KDY               SWSFYRAGIAEF+ATFLFLYI+VLTVMGV KS +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FY++MQCLGAICGAGVVKGF               VA GYTKGDGLGAEI+GTF+LVYTVFSAT
Sbjct:    8 VRLGANKFSERQPIGTAAQGAGAGDDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQ-QGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSAT 202          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.367e-74
Identity = 143/193 (74.09%), Postives = 157/193 (81.35%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQ-DGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VRLGAN+++ERQPIGTAAQ   D KDY               SWSFYRAGIAEF+ATFLFLYI++LTVMGV KS++KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FY+VMQCLGAICGAGVVKGF               VA GYTKGDGLGAEI+GTF+LVYTVFSAT
Sbjct:    8 VRLGANRYSERQPIGTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQ-QGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSAT 199          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.046e-74
Identity = 145/192 (75.52%), Postives = 155/192 (80.73%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VR+GANKF ERQPIGT+AQS D KDY              +SWSFYRAGIAEFIATFLFLYI+VLTVMGV ++   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FYM+MQCLGAICGAGVVKGF               VAHGYTKG GLGAEIIGTFVLVYTVFSAT
Sbjct:    8 VRVGANKFPERQPIGTSAQSTD-KDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQ-PTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSAT 197          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.744e-73
Identity = 144/192 (75.00%), Postives = 154/192 (80.21%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VR+GANKF ERQPIGT+AQS   KDY              +SWSF+RAGIAEFIATFLFLYI+VLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL+Y+VMQCLGAICGAGVVKGF               VAHGYTKG GLGAEIIGTFVLVYTVFSAT
Sbjct:    8 VRVGANKFPERQPIGTSAQSD--KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSAT 196          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.744e-73
Identity = 144/192 (75.00%), Postives = 154/192 (80.21%), Query Frame = 3
Query:  114 VRLGANKFTERQPIGTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            VR+GANKF ERQPIGT+AQS   KDY              +SWSF+RAGIAEFIATFLFLYI+VLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL+Y+VMQCLGAICGAGVVKGF               VAHGYTKG GLGAEIIGTFVLVYTVFSAT
Sbjct:    8 VRVGANKFPERQPIGTSAQSD--KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSAT 196          
The following BLAST results are available for this feature:
BLAST of FC931370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
PIP15_MAIZE1.908e-7676.04Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP12_ORYSJ1.908e-7676.56Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP2_PEA9.468e-7676.17Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP13_ORYSJ1.615e-7575.52Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP12_MAIZE3.598e-7574.61Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE8.015e-7573.98Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_ORYSJ1.367e-7474.09Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP14_ARATH3.046e-7475.52Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_VICFA5.744e-7375.00Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH5.744e-7375.00Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104D07EF PostHarvP1 Citrus clementina cDNA clone C34104D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931370 ID=FC931370; Name=FC931370; organism=Citrus clementina; type=EST; length=689bp
AGGGACTCCCGTAGCAAGATCAAACAGCTACACGCAGACGACTCAAATCT
TTTTTGTCTTTTAGCTAATTAAGTGAAGAAGAGCGAGCGAAAATGGAGGG
CAAAGAAGAGGGCGTTAGATTAGGAGCCAATAAGTTCACTGAGAGGCAAC
CGATTGGAACGGCAGCTCAGAGCCAAGATGGAAAGGACTACGTTGAGCCG
CCGCCGGCACCACTCTTCGAGGAAGAAGAGCTCACGTCTTGGTCGTTTTA
CAGGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCT
CCGTATTGACAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACC
GTCGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGCGCT
CGTTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGA
CATTCGGGCTGTTCTTGGCGAGGAAGCTGTCGTTGACACGTGCACTTTTC
TACATGGTGATGCAGTGTCTGGGAGCCATCTGTGGTGCTGGCGTTGTAAA
GGGTTTCATGGGTGCCGGCCAATACGGTCGGCTCGGCGGCGGTGCCAATG
CTGTAGCCCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATT
GGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACT
back to top