FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:107..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 5.993e-90
Identity = 153/199 (76.88%), Postives = 176/199 (88.44%), Query Frame = 2 
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            KLPVRFAMDRAGLVGADGPTHCGAFD+T+M+CLPNMVVMAPSDEAEL HMVATAA IDDRPSCFR+PRGNGIG  LPPN KG PLE+GKGR+L+EG+RVA+LGYGS VQ C+ AA++++   + VTVADARFCKPLD  LIR+LA+ HE+L+TVEEGS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPAD
Sbjct:  487 KLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPAD 685
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.974e-89
Identity = 154/199 (77.39%), Postives = 175/199 (87.94%), Query Frame = 2 
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            KLPVRFAMDRAGLVGADGPTHCGAFD+TFM+CLPNMVVMAPSDEAEL H+VATAA IDDRPSCFR+PRGNGIG  LP  NKG PLE+GKGRIL+EG+RVA+LGYGS VQ C+ AA++L+S+ + VTVADARFCKPLD  LIR LA  HE+L+TVE+GS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPAD
Sbjct:  490 KLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPAD 688
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 3.884e-89
Identity = 155/199 (77.89%), Postives = 173/199 (86.93%), Query Frame = 2 
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            KLPVRFAMDRAGLVGADGPTHCGAFD+TFM+CLPNM+VMAPSDEA+L +MVATA  IDDRPSCFR+PRGNGIG  LPP NKG P+EIGKGRIL EG+RVA+LGYGS VQ C+ AA ML+ + ++VTVADARFCKPLD  LIR LA  HE+LITVEEGS+GGFGSHV  FL L G+LDG LK R MVLPDRYIDHG+PAD
Sbjct:  491 KLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPAD 689
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.109e-65
Identity = 119/196 (60.71%), Postives = 152/196 (77.55%), Query Frame = 2 
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P  + G PLEIGKGR++ +G++VA+L +G+ + +C  AA  L +  +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFG+HV   L   G LDG +K+R+MVLPD ++DH +P
Sbjct:  411 LPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAINDRPSALRYPRGEGRGVEMP--DVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELAALGLSTTVADARFMKPLDVDLVLKLANEHEILITIEEGSIGGFGTHVMQTLAEHGKLDGEVKMRAMVLPDVFLDHDTP 604
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.109e-65
Identity = 120/197 (60.91%), Postives = 153/197 (77.66%), Query Frame = 2 
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625
            LPVRFA+DRAGLVGADG TH G+FD  ++ CLPN V+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P  + G PLEIGKGR++ +G++VA+L +G+ + +C  AA  L +  +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFGSHV   L+  G LDG +K+R+MVLPD ++DH +PA
Sbjct:  411 LPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--DVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPA 605
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.183e-64
Identity = 121/196 (61.73%), Postives = 149/196 (76.02%), Query Frame = 2 
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P
Sbjct:  412 LPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKP 605

HSP 2 Score: 23.8682 bits (50), Expect = 1.183e-64
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:    3 DQVVHDVDLQN 35
            DQVVHDV +QN
Sbjct:  401 DQVVHDVSIQN 411
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.183e-64
Identity = 121/196 (61.73%), Postives = 149/196 (76.02%), Query Frame = 2 
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P
Sbjct:  412 LPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGATGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKP 605

HSP 2 Score: 23.8682 bits (50), Expect = 1.183e-64
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:    3 DQVVHDVDLQN 35
            DQVVHDV +QN
Sbjct:  401 DQVVHDVSIQN 411
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.183e-64
Identity = 121/196 (61.73%), Postives = 149/196 (76.02%), Query Frame = 2 
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P
Sbjct:  412 LPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKP 605

HSP 2 Score: 23.8682 bits (50), Expect = 1.183e-64
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:    3 DQVVHDVDLQN 35
            DQVVHDV +QN
Sbjct:  401 DQVVHDVSIQN 411
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 3.419e-64
Identity = 120/196 (61.22%), Postives = 148/196 (75.51%), Query Frame = 2 
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TV DARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P
Sbjct:  412 LPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVVDARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKP 605

HSP 2 Score: 23.8682 bits (50), Expect = 3.419e-64
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:    3 DQVVHDVDLQN 35
            DQVVHDV +QN
Sbjct:  401 DQVVHDVSIQN 411
[Close]
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 3.419e-64
Identity = 120/196 (61.22%), Postives = 148/196 (75.51%), Query Frame = 2 
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD   K+R++ LPD Y DHG P
Sbjct:  412 LPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKP 605

HSP 2 Score: 23.8682 bits (50), Expect = 3.419e-64
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:    3 DQVVHDVDLQN 35
            DQVVHDV +QN
Sbjct:  401 DQVVHDVSIQN 411
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ORYSJ5.993e-9076.88Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN2.974e-8977.39Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH3.884e-8977.89Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHOPS5.109e-6560.711-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOP25.109e-6560.911-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRUSU1.183e-6461.731-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI1.183e-6461.731-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC21.183e-6461.731-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUO23.419e-6461.221-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUME3.419e-6461.221-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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