FC931435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P TGEA+V+F Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQF 159 HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 460 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P TGEA+V+F Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQF 159 HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 460 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 59/170 (34.71%), Postives = 88/170 (51.76%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P TGEA+V+F Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQF 159 HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 460 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 59/170 (34.71%), Postives = 88/170 (51.76%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P TGEA+V+F Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQF 159 HSP 2 Score: 76.6406 bits (187), Expect = 1.490e-13 Identity = 64/225 (28.44%), Postives = 92/225 (40.89%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE----GIYDNDFHGSPPPSRAK------------------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Y + + E G Y + G S RY D + Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17 Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EI+QFF +I+ + I + P TGEA+V+F Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADTAND-------GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQF 159 HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 460 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16 Identity = 57/174 (32.76%), Postives = 84/174 (48.28%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P ATGE +VEF Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH1_MOUSE (Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15 Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + I + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 77.0258 bits (188), Expect = 1.141e-13 Identity = 67/225 (29.78%), Postives = 96/225 (42.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH1_HUMAN (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4) HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15 Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + I + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 77.0258 bits (188), Expect = 1.141e-13 Identity = 67/225 (29.78%), Postives = 96/225 (42.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEF 335
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15 Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P ATGE +VEF Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 478
BLAST of FC931435 vs. ExPASy Swiss-Prot
Match: HNRH2_RAT (Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus GN=Hnrnph2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15 Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 233 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + +TGEA+V+F Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF 159 HSP 2 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 67/225 (29.78%), Postives = 96/225 (42.67%), Query Frame = 2 Query: 236 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP*W*ATGEAYVEF 727 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI P TGEA VEF Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEF 335 The following BLAST results are available for this feature:
BLAST of FC931435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931435 ID=FC931435; Name=FC931435; organism=Citrus clementina; type=EST; length=732bpback to top |