FC931437

Overview
NameFC931437
Unique NameFC931437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1B_HUMAN (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.847e-62
Identity = 113/169 (66.86%), Postives = 136/169 (80.47%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLR 596
            RPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EKR R
Sbjct:   75 RPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYR 241          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1B_RAT (Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.342e-62
Identity = 112/169 (66.27%), Postives = 136/169 (80.47%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLR 596
            RPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+ R
Sbjct:   75 RPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYR 241          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1B_MOUSE (Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 6.342e-62
Identity = 112/169 (66.27%), Postives = 136/169 (80.47%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLR 596
            RPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+ R
Sbjct:   75 RPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYR 241          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1A_RAT (Choline-phosphate cytidylyltransferase A OS=Rattus norvegicus GN=Pcyt1a PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.946e-59
Identity = 105/167 (62.87%), Postives = 134/167 (80.24%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKR 590
            RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+
Sbjct:   75 RPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKK 239          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1A_HUMAN (Choline-phosphate cytidylyltransferase A OS=Homo sapiens GN=PCYT1A PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.946e-59
Identity = 105/167 (62.87%), Postives = 134/167 (80.24%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKR 590
            RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+
Sbjct:   75 RPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKK 239          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1_SCHPO (Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPCC1827.02c PE=1 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.847e-59
Identity = 109/169 (64.50%), Postives = 134/169 (79.29%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYA-DASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRL 593
            RPVRVYADG++DLFH GH R LEQAKK FPN +L+VG  ND+ TH+ KG TVM + ER E+LRHCKWVDEV+ +APWV+T EFL++H+IDFVAHD +PYA D SG   D+Y  VK  GKF  TKRT+G+STSD+I RI++DY+QYVMRNL RG +RK+L VS  K+  L
Sbjct:  100 RPVRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERAEALRHCKWVDEVLENAPWVITPEFLEEHKIDFVAHDDIPYASDDSG---DIYLPVKKVGKFIPTKRTEGVSTSDLITRIIRDYDQYVMRNLARGVNRKELNVSLFKKNEL 265          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1A_MOUSE (Choline-phosphate cytidylyltransferase A OS=Mus musculus GN=Pcyt1a PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.847e-59
Identity = 105/167 (62.87%), Postives = 134/167 (80.24%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKR 590
            RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+
Sbjct:   75 RPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKDAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKK 239          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1A_CRIGR (Choline-phosphate cytidylyltransferase A OS=Cricetulus griseus GN=PCYT1A PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.909e-58
Identity = 104/167 (62.28%), Postives = 133/167 (79.64%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKR 590
            RPVRVYADGI+DLFH GHAR+L QAK  FPNTY +VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+
Sbjct:   75 RPVRVYADGIFDLFHSGHARALMQAKNLFPNTYPIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKK 239          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1_YEAST (Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae GN=PCT1 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 93/168 (55.36%), Postives = 131/168 (77.98%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRL 593
            RP+R+YADG++DLFH GH + LEQ KK+FPN  L+VG  +D+ THK KG TV+T+ +R E+L HC+WVDEV+P+APW VT EFL +H+ID+VAHD +PY  A     D+Y+ +K  GKF  T+RT+G+STSDII +I++DY++Y+MRN  RG +R++L VS++K+  L
Sbjct:  102 RPIRIYADGVFDLFHLGHMKQLEQCKKAFPNVTLIVGVPSDKITHKLKGLTVLTDKQRCETLTHCRWVDEVVPNAPWCVTPEFLLEHKIDYVAHDDIPYVSAD--SDDIYKPIKEMGKFLTTQRTNGVSTSDIITKIIRDYDKYLMRNFARGATRQELNVSWLKKNEL 267          
BLAST of FC931437 vs. ExPASy Swiss-Prot
Match: PCY1_CAEEL (Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.357e-54
Identity = 92/170 (54.12%), Postives = 127/170 (74.71%), Query Frame = 3
Query:   90 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRV 599
            RPVR+YADGIYDLFH GHA  L Q KK FPN YL+VG C D  THK+KG+TV +E+ERY+ +RHC++VDEV  +APW  T EFL   ++DF+AHD++PY   +   +D+YE  +  G F ET+RT+G+STSD++ RI++DY++YV RNL RGYS K+L V ++   + ++
Sbjct:   79 RPVRIYADGIYDLFHHGHANQLRQVKKMFPNVYLIVGVCGDRDTHKYKGRTVTSEEERYDGVRHCRYVDEVYREAPWFCTVEFLKNLKVDFIAHDAIPY--VAPGEEDLYEKFRREGMFLETERTEGVSTSDVVCRIIRDYDKYVRRNLQRGYSPKELNVGFLAASKYQI 246          
The following BLAST results are available for this feature:
BLAST of FC931437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PCY1B_HUMAN2.847e-6266.86Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
PCY1B_RAT6.342e-6266.27Choline-phosphate cytidylyltransferase B OS=Rattus... [more]
PCY1B_MOUSE6.342e-6266.27Choline-phosphate cytidylyltransferase B OS=Mus mu... [more]
PCY1A_RAT2.946e-5962.87Choline-phosphate cytidylyltransferase A OS=Rattus... [more]
PCY1A_HUMAN2.946e-5962.87Choline-phosphate cytidylyltransferase A OS=Homo s... [more]
PCY1_SCHPO3.847e-5964.50Probable choline-phosphate cytidylyltransferase OS... [more]
PCY1A_MOUSE3.847e-5962.87Choline-phosphate cytidylyltransferase A OS=Mus mu... [more]
PCY1A_CRIGR1.909e-5862.28Choline-phosphate cytidylyltransferase A OS=Cricet... [more]
PCY1_YEAST3.727e-5455.36Choline-phosphate cytidylyltransferase OS=Saccharo... [more]
PCY1_CAEEL6.357e-5454.12Putative choline-phosphate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34105B02EF PostHarvP1 Citrus clementina cDNA clone C34105B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931437 ID=FC931437; Name=FC931437; organism=Citrus clementina; type=EST; length=717bp
ATAACGAGGAGAATACCAATAACCGCAGCGAAAAAATGAGTAACGCAAAT
TCGAATAATTCAAATTCGACTGATACGGCGCCGTCTGATCGCCCCGTTAG
AGTCTACGCCGATGGGATCTACGATCTTTTCCATTTCGGCCACGCTCGCT
CCCTTGAACAAGCCAAGAAATCGTTTCCAAACACCTACCTCCTTGTCGGA
TGCTGCAATGATGAAACTACTCATAAGTTTAAGGGCAAAACTGTTATGAC
AGAGGATGAGCGCTACGAATCTCTTCGTCATTGCAAATGGGTGGATGAAG
TCATTCCCGATGCACCTTGGGTGGTCACGCAAGAATTTCTTGACAAGCAC
CAGATTGACTTTGTGGCTCATGACTCCCTTCCTTATGCCGATGCCAGTGG
TGCCGGAAAAGATGTTTATGAATTTGTTAAAGCTGCTGGGAAGTTTAAGG
AAACAAAACGAACTGATGGGATTTCAACATCAGACATTATTATGAGAATT
GTTAAAGACTATAACCAGTATGTGATGCGTAACTTGGATCGAGGATATTC
AAGAAAAGACCTTGGTGTTAGCTATGTAAAGGAAAAACGGCTGAGGGTTA
ACATGAAATTAAAGAAACTGCAAGAGAAAGTGAAACAACNACAAGAGCGT
GTTGGAGAAAGATCCAACCGTTGCAATGCATCGTAATGAGTGGGTGGAAA
TGCTGATCGCTGGGTTG
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