FC931487
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28 Identity = 78/203 (38.42%), Postives = 108/203 (53.20%), Query Frame = 3 Query: 90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689 +++ K RK N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ + +A ++L F + Sbjct: 2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNT 202
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28 Identity = 78/203 (38.42%), Postives = 110/203 (54.19%), Query Frame = 3 Query: 90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689 +++ K RK+ N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ + +A ++L F++ Sbjct: 2 YEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFST 202
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28 Identity = 71/206 (34.47%), Postives = 113/206 (54.85%), Query Frame = 3 Query: 72 TEVSQQFDRFKAAMT-RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIC-ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLF 683 + + Q + FK + D T +L QLK+ T P + + + +L LAR+I E L S+K++D D+FER F QLK YY D + PS EY I +++ +EFH N IK + +E+S EG+YN+++ ++ VP+E Y F+D+LA +++++IA CSEK++ LS+KDA ++LLF Sbjct: 4 SSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVLLF 209
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28 Identity = 78/203 (38.42%), Postives = 108/203 (53.20%), Query Frame = 3 Query: 90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689 +++ K RK N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ + +A ++L F + Sbjct: 2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNT 202
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28 Identity = 78/203 (38.42%), Postives = 108/203 (53.20%), Query Frame = 3 Query: 90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689 +++ K RK N C + L +LK++L LP T +L LARDI E S+ +D +FER QLK YY D ++LP S + + QNR+AEFH N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L T+RDEIAGC EKAY+ + +A ++L F + Sbjct: 2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNT 202
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18 Identity = 58/189 (30.69%), Postives = 98/189 (51.85%), Query Frame = 3 Query: 117 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX--NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQML 677 RKD+N C + L +LKV L P + + + AR+++E+ VL+S++ D ++F R Q+ P+Y D+ L PS ++ +NRIAEFH +P ++ + LEQ+ MEGA+++V S ++ + YFM ++ VR+EIA C+EK Y + + +A +L Sbjct: 15 RKDWNACKKELLKLKVELAKQNLFVPTSDKE-----KASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLL 195
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_CAEEL (26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17 Identity = 59/189 (31.22%), Postives = 97/189 (51.32%), Query Frame = 3 Query: 120 KDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLF 683 KD + L++L +L+ L D +A+ ++D+YE +VLL++ D + F+ Q+ YYT A + S N++++ NR+++FH N I V +EQS MEGAYN+V+ ++N+P+ Y F+ ++ T+R EIA EK++ L+ KDA MLLF Sbjct: 17 KDLVAVEKALNELTKVLSASSDL----NDKQSALA----SKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLF 194
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13 Identity = 56/217 (25.81%), Postives = 97/217 (44.70%), Query Frame = 3 Query: 63 PKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKV-LLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFH---XXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNR----VLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689 P L E+++ A DY C +LL +K+ L+ +P L + +L + + I E L S++ + D+FE F QLKPYY +L S + + QN +FH + + + ++L++ MEG+Y + + S QN+ + F D+L +RDEIA +E +YD+L + + +L F + Sbjct: 2 PSLAELTKSLS---IAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNI--SEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNN 213 The following BLAST results are available for this feature:
BLAST of FC931487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931487 ID=FC931487; Name=FC931487; organism=Citrus clementina; type=EST; length=689bpback to top |