FC931487

Overview
NameFC931487
Unique NameFC931487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 78/203 (38.42%), Postives = 108/203 (53.20%), Query Frame = 3
Query:   90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689
            +++ K    RK  N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F +
Sbjct:    2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNT 202          
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 78/203 (38.42%), Postives = 110/203 (54.19%), Query Frame = 3
Query:   90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689
            +++ K    RK+ N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F++
Sbjct:    2 YEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFST 202          
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 71/206 (34.47%), Postives = 113/206 (54.85%), Query Frame = 3
Query:   72 TEVSQQFDRFKAAMT-RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIC-ELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLF 683
            + + Q  + FK  +    D    T +L QLK+  T     P    +  + +  +L LAR+I E   L S+K++D D+FER F QLK YY D    + PS  EY I          +++ +EFH            N  IK  + +E+S  EG+YN+++ ++  VP+E Y  F+D+LA +++++IA CSEK++  LS+KDA ++LLF
Sbjct:    4 SSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVLLF 209          
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28
Identity = 78/203 (38.42%), Postives = 108/203 (53.20%), Query Frame = 3
Query:   90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689
            +++ K    RK  N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F +
Sbjct:    2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNT 202          
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28
Identity = 78/203 (38.42%), Postives = 108/203 (53.20%), Query Frame = 3
Query:   90 FDRFKAAMTRKDYNT--CTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689
            +++ K    RK  N   C + L +LK++L     LP     T     +L LARDI E     S+  +D  +FER   QLK YY D  ++LP S   + +          QNR+AEFH             N  IKH V LEQ  MEG+YN+V  AK N+P E+Y +F+D+L  T+RDEIAGC EKAY+ +   +A ++L F +
Sbjct:    2 YEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNT 202          
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 58/189 (30.69%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  117 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX--NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQML 677
            RKD+N C + L +LKV L       P  +       + + AR+++E+ VL+S++  D ++F R   Q+ P+Y D+   L PS    ++          +NRIAEFH              +P ++  + LEQ+ MEGA+++V S  ++     + YFM ++   VR+EIA C+EK Y  + + +A  +L
Sbjct:   15 RKDWNACKKELLKLKVELAKQNLFVPTSDKE-----KASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLL 195          
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: PSMD8_CAEEL (26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 59/189 (31.22%), Postives = 97/189 (51.32%), Query Frame = 3
Query:  120 KDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFHXXXXXXXXXXXX-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLF 683
            KD     + L++L  +L+    L     D  +A+     ++D+YE +VLL++   D + F+    Q+  YYT A +    S N++++           NR+++FH             N  I   V +EQS MEGAYN+V+  ++N+P+  Y  F+ ++  T+R EIA   EK++  L+ KDA  MLLF
Sbjct:   17 KDLVAVEKALNELTKVLSASSDL----NDKQSALA----SKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLF 194          
BLAST of FC931487 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 56/217 (25.81%), Postives = 97/217 (44.70%), Query Frame = 3
Query:   63 PKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKV-LLTGFRSLPPLFEDTPNAICELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMIXXXXXXXXXVQNRIAEFH---XXXXXXXXXXXXNPCIKHAVELEQSFMEGAYNR----VLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 689
            P L E+++       A    DY  C +LL  +K+ L+     +P L       + +L + + I E   L S++  + D+FE  F QLKPYY     +L  S  +  +          QN   +FH               +  + + ++L++  MEG+Y +    + S  QN+    +  F D+L   +RDEIA  +E +YD+L + +   +L F +
Sbjct:    2 PSLAELTKSLS---IAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNI--SEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNN 213          
The following BLAST results are available for this feature:
BLAST of FC931487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSMD8_PONAB4.309e-2838.4226S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_MOUSE4.309e-2838.4226S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_DICDI4.309e-2834.47Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD8_HUMAN7.351e-2838.4226S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_BOVIN7.351e-2838.4226S proteasome non-ATPase regulatory subunit 8 OS=... [more]
RPN12_SCHPO4.043e-1830.6926S proteasome regulatory subunit rpn12 OS=Schizos... [more]
PSMD8_CAEEL9.958e-1731.2226S proteasome non-ATPase regulatory subunit 8 OS=... [more]
RPN12_YEAST1.758e-1325.8126S proteasome regulatory subunit RPN12 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionC34105F06EF PostHarvP1 Citrus clementina cDNA clone C34105F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931487 ID=FC931487; Name=FC931487; organism=Citrus clementina; type=EST; length=689bp
GAAAGCGTAAACAAAAGCTTTAACGCAGGGACGAAGACAAGCACGCAGAT
TGAGAGATGGATCCAAAACTCACAGAAGTTTCTCAGCAGTTTGATCGCTT
TAAAGCTGCAATGACTAGAAAAGACTATAACACATGTACCCAACTCCTCT
CTCAACTCAAGGTTCTGCTGACTGGATTCAGAAGCCTCCCGCCATTGTTT
GAAGATACGCCTAATGCAATATGTGAATTGACGTTAGCTAGGGACATTTA
CGAGCACGCTGTTCTCCTAAGTGTGAAGGTGGAGGATCAAGATGCTTTTG
AGAGGGATTTTTTTCAATTGAAGCCCTATTATACAGATGCTGGGAAGCGC
CTTCCACCATCCCCAAATGAGTACATGATTTTGGGTCTTAACTTGTTGAG
ACTCTTAGTCCAGAACAGAATTGCTGAATTCCATACTGAACTGGAATTGC
TTTCATCTACTGCATTGGAGAATCCTTGCATCAAGCACGCGGTGGAGTTG
GAGCAATCATTTATGGAAGGGGCTTATAATCGTGTCTTGAGTGCCAAACA
GAATGTACCTAATGAAACTTATGGTTATTTCATGGATCTCCTAGCTAAGA
CAGTAAGAGATGAGATAGCTGGATGTAGTGAGAAGGCATATGATTATCTT
TCAATTAAAGATGCCGGCCAAATGTTGCTGTTCACTTCT
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