FC931565

Overview
NameFC931565
Unique NameFC931565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931565 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.708e-37
Identity = 76/191 (39.79%), Postives = 118/191 (61.78%), Query Frame = 1
Query:   16 ESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGV-DSDDLRPTIVEKIARASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGPTEPELEEVPEICRKEAVEWNHHVKQLGELLFGLL 585
            E+YDRA E+K FDE             T +PR F +P   +A+ +P S       ++PTIDL GV +S  +R ++V K+  A  + GFFQ +NHG+ ++V+E+M+  I+ FH+Q PE++   Y R+ TK + Y SN DL+ S AASWRDTL   + P  P+ +++PE+C +  +E++  V +L EL+F +L
Sbjct:    3 ENYDRASELKAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNVANPKPTSTVV----MIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLSCVMAPDVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEIL 189          
BLAST of FC931565 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.193e-35
Identity = 77/191 (40.31%), Postives = 110/191 (57.59%), Query Frame = 1
Query:   19 SYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDL--RPTIVEKIARASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGPTEPELEEVPEICRKEAVEWNHHVKQLGELLFGLL 585
            S+DRA E+K FDE+            + IPR F H    LA+ +P          +PTIDL G D  D       +E I  A+ + GFFQV+NHG+ +E+LE+M   ++ FHEQPPE++  +Y R+  +   Y+SN DL+ + AA+WRDT    + P  PE +++PEICR   +E++  V  LGE LF LL
Sbjct:    9 SFDRASELKAFDETKTGVKGLVDSGISKIPRIFHHSSVELANPKPLPSDLLHLKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRDTFYCYMAPDPPEPQDLPEICRDVMMEYSKQVMILGEFLFELL 199          
BLAST of FC931565 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.658e-35
Identity = 74/190 (38.95%), Postives = 110/190 (57.89%), Query Frame = 1
Query:   22 YDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDL--RPTIVEKIARASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGPTEPELEEVPEICRKEAVEWNHHVKQLGELLFGLL 585
            +DRA E+K FDE+            + +PR F HP   L+  +P          +PTIDL G D  D   R   +E+I  A+ + GFFQV+NHG+ +E+LE+M + ++ FHEQ  E++   Y R+ ++   Y+SN DLF S AA+WRDT    + P  P+ +++PEICR   +E++  V  LG+ LF LL
Sbjct:   10 FDRASELKAFDETKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHLKTIPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPEICRDIMMEYSKQVMNLGKFLFELL 199          
BLAST of FC931565 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.250e-34
Identity = 80/196 (40.82%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    1 TIMSLESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDL-RPTIVEKIARASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGPTEPELEEVPEICRKEAVEWNHHVKQLGELLFGLL 585
            ++  + + DR+  +K FDE+            T IP  F  PPATL   +P S +      +PTIDL G  +D + R ++VEKI  A+ + GFFQV+NHGI ++VLE+M+  I+ FHEQ  E+K   Y R+    + Y SN DLF S AA+WRDTL     P  P  E++P  C +  +E++  V +LG+LLF LL
Sbjct:    4 SLPQVAALDRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSS---DFSIPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMMIEYSKEVMKLGKLLFELL 196          
BLAST of FC931565 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 1
Query:   16 ESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLR-PTIVEKIARASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSK--AASWRDTLQIRLGPTEPELEEVPEICRKEAVEWNHHVKQLGELLFGLL 585
            ESYD+  E+K FD++            T +P+ F+ PP      + ++K      V P IDL G+D D ++   IV+K+  AS + GFFQVVNHGI   VL+R ++  + F EQ  E+K   Y R+  K V Y SN+DL+ S   AASWRDT+   + P  P L+E P  C +  ++++  VK+LG  L  LL
Sbjct:    8 ESYDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPP------KDRAKKCETHFVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAPNPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELL 194          
BLAST of FC931565 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.278e-29
Identity = 73/195 (37.44%), Postives = 114/195 (58.46%), Query Frame = 1
Query:   10 SLESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDV-VPTIDLSGVDSD-DLRPTIVEKIARASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRREN-TKGVSYISNIDLFHSKAASWRDTLQIRLGPTEPELEEVPEICRKEAVEWNHHVKQLGELLFGLL 585
            +L   +  +E+K FDE+            T IPR FI  P  L  +   S  R  SD+ +P I+L+G+ S+ ++R  IVEKI  AS + GFFQ+VNHGI  +V+++MV  ++ FHEQ  +IK   Y R+   K   Y SN  L    A +WRDT++  +   +P+ +E P++CR   ++++++V+ LG +LF LL
Sbjct:   35 TLSEEESLRELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRI---SVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIMNSNQPDPQEFPDVCRDILMKYSNYVRNLGLILFELL 226          
The following BLAST results are available for this feature:
BLAST of FC931565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GSL_ARATH3.708e-3739.79Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCH2_ARATH1.193e-3540.311-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_ARATH2.658e-3538.951-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH1_ARATH2.250e-3440.821-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC1.783e-3138.861-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO1.278e-2937.44Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
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Properties
Property NameValue
Genbank descriptionC34106E09EF PostHarvP1 Citrus clementina cDNA clone C34106E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931565 ID=FC931565; Name=FC931565; organism=Citrus clementina; type=EST; length=587bp
ACAATCATGAGCCTAGAATCATACGACAGGGCCAAAGAAGTGAAACGATT
CGACGAGTCCAAAGTCGGGGTCAAAGGTTTAGTTGACTTGGGCGTCACCG
CCATCCCCCGCTTTTTCATCCACCCACCCGCCACTCTTGCCGATCTCAGA
CCCAAGTCAAAGACCCGGCCCGTCTCTGATGTAGTCCCCACCATCGATTT
ATCGGGCGTTGACTCGGACGATCTGCGGCCGACGATTGTGGAAAAGATAG
CACGTGCCTCGCGGGAGCTGGGGTTCTTTCAGGTTGTGAATCACGGCATC
GGAGTTGAGGTCTTGGAGCGTATGGTTCGGGCCATTAAAGGGTTTCATGA
ACAGCCGCCAGAGATCAAGGCGCCGGTGTATCGGAGGGAGAACACCAAAG
GCGTGTCTTACATTTCCAACATCGATTTGTTTCACTCTAAAGCTGCCAGC
TGGAGGGACACACTGCAGATAAGGCTAGGTCCGACGGAACCAGAGCTTGA
AGAAGTTCCTGAAATATGTAGGAAAGAGGCAGTCGAGTGGAACCACCATG
TAAAACAGCTCGGAGAGCTTTTGTTTGGGCTGCTGTG
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