FC931570

Overview
NameFC931570
Unique NameFC931570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931570 vs. ExPASy Swiss-Prot
Match: GLU2B_MOUSE (Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  199 LLRNLIPLISLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 618
            +L  L+ L+ LC+ V   + +   L  H     Y   +   C DG+ +   D++ND++CDC DG+DEPGT+ACP G F+C N G  P +I SSRVND +CDCCDG+DEY+S   C NTC   G  E ++   ++ +   G
Sbjct:    1 MLLLLLLLLPLCWAVEVKRPRGVSLSNHHF---YEESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEKESLQQLAEVTREG 137          
BLAST of FC931570 vs. ExPASy Swiss-Prot
Match: GLU2B_HUMAN (Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  199 LLRNLIPLISLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 618
            +L  L+ L+ +C+ V   + +   L  H     Y   +   C DGS +   D++ND++CDC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC   G  E ++   ++ +   G
Sbjct:    1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHF---YDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESLQQMAEVTREG 137          
BLAST of FC931570 vs. ExPASy Swiss-Prot
Match: GLU2B_BOVIN (Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  211 LIPLISLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 618
            L+ L+ +C+ V   + +   L  H     Y   +   C DGS S   D++ND++CDC DG+DEPGT+ACP G F+C N G    +I S  VND +CDCCDG+DEY+S I C NTC   G  E +    ++ +   G
Sbjct:    4 LLLLLPMCWAVEVRRPRGVSLTNHHF---YDESKPFTCLDGSASIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKALYISSRWVNDGVCDCCDGTDEYNSGIVCENTCKEKGRKERETLQQMAEVTREG 136          
BLAST of FC931570 vs. ExPASy Swiss-Prot
Match: GLU2B_SCHPO (Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe GN=gtb1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  319 KCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKI 645
            KC    K  + +++ND++CDC DG+DEPGTSAC  GKF+C N G    +I S+RV+D +CDCCDGSDE  S IKCPNTC        KA+ Y++T+ +   +   G KI
Sbjct:   47 KCLGSDKLISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE--SLIKCPNTCAQ------KAREYLATLEEHNRLVKNGLKI 147          
BLAST of FC931570 vs. ExPASy Swiss-Prot
Match: GLU2B_YEAST (Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae GN=GTB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 1
Query:  355 RLNDNFCDCIDGTDEPGTSACP----------AGK----FYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 522
            ++ND  CDC DG+DEPG++AC            GK    FYC N G  P++I  S V D ICDCCD SDE
Sbjct:   63 QINDGVCDCPDGSDEPGSAACVEDIFKSVAEGGGKVNKYFYCDNKGFIPRYIRKSEVADGICDCCDCSDE 132          
The following BLAST results are available for this feature:
BLAST of FC931570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GLU2B_MOUSE2.249e-2741.43Glucosidase 2 subunit beta OS=Mus musculus GN=Prkc... [more]
GLU2B_HUMAN6.545e-2740.71Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKC... [more]
GLU2B_BOVIN3.591e-2541.18Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH... [more]
GLU2B_SCHPO1.045e-2448.62Glucosidase 2 subunit beta OS=Schizosaccharomyces ... [more]
GLU2B_YEAST5.034e-1148.57Glucosidase 2 subunit beta OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionC34106F02EF PostHarvP1 Citrus clementina cDNA clone C34106F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931570 ID=FC931570; Name=FC931570; organism=Citrus clementina; type=EST; length=706bp
GAATTTTTAAAACTAGAGCAAATCGAATTTCTGAAAAATTCACGGGAAAT
ATGATTGTGGATATAAGAAAAAGAAAAAAGGAAGAGAAAGAAAAAGGCTG
GGCCAATTGACTCTCGAGTCAAAGTGGAAATTGGAGTAAACGTGGCTGTG
GCCTGAGGGCATGGTATCTGATGAAACCAAAGAGAGATGATGATGGAGTT
GTTAAGAAATTTGATACCTCTAATTTCCCTTTGTTTCCTTGTGGTCTTTG
TTCAGTGTAAATCTTCTCTCCTTGGCGTTCACCCACTTGATGAGAAGTAT
TTCTCGAAAGAGGTTATCAAATGCAAAGATGGATCCAAATCTTTCACAAG
AGACCGCCTTAACGACAATTTCTGCGATTGCATTGATGGAACCGATGAGC
CCGGAACTTCTGCTTGTCCAGCAGGCAAATTTTACTGTGGGAATGTTGGA
AGTACACCTCAATTCATTTTCTCTTCTCGCGTCAATGATCGTATATGTGA
CTGTTGTGATGGAAGTGACGAGTATGATAGCAGTATCAAGTGTCCCAACA
CTTGTGTCATGGGAGGGAATATTGAGTACAAGGCTCAGAGTTACATATCT
ACAATCAATGATGCTGGCTCTATTGATGCAAGAGGAGCCAAAATTCCAGT
CAACAAGGAGGACTTGATTGAGAGGCTTAAGATGTGAGATGGTAGTATTC
TGCAGT
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