FC931572

Overview
NameFC931572
Unique NameFC931572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 395.201 bits (1014), Expect = 1.739e-109
Identity = 188/230 (81.74%), Postives = 210/230 (91.30%), Query Frame = 3
Query:    6 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            TTDCYRKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+IGGHNDVLAGCI GS KLV++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPS
Sbjct:  277 TTDCYRKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPS 506          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.558e-44
Identity = 90/223 (40.36%), Postives = 141/223 (63.23%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 677
            D Y  T      VL K G++ T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFATP  Q  L LGAD+V HS TK++GGH+DV+AG ++  +E L  +I    + +GG L P  ++L+ RG+KTL LR++     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G++SF +  D  A + F+++LK+
Sbjct:   96 DVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEA-VAFVESLKL 316          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 92/229 (40.17%), Postives = 150/229 (65.50%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  T   ++ VL K GI   ++D ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG ++  S++L ++I  L + +G  L P  ++L+ RG+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S
Sbjct:   97 DVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAES 323          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 92/229 (40.17%), Postives = 150/229 (65.50%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  T   ++ VL K GI   ++D ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG ++  S++L ++I  L + +G  L P  ++L+ RG+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S
Sbjct:   97 DVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAES 323          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 91/231 (39.39%), Postives = 147/231 (63.64%), Query Frame = 3
Query:    6 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-CISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            T D Y  T   +  VL ++GI +T +D +  E +E A+  N  +++  E+PTNP L+  D+ L++D+  K G ++ +D TF TP  Q+ L+LGAD+VLHSATK++GGH+DV+ G  ++ S++L  ++  + +  GG L P  ++L++RG+KTL LR++  +  A ++A  LE HP V+ ++YPG  +HP H +A  Q  GFGG++SF++ G       F+  LK+  IA S
Sbjct:   94 TDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAIYI-ETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDI-GSEERVDAFLGNLKLFTIAES 322          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.828e-43
Identity = 92/229 (40.17%), Postives = 148/229 (64.63%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCI-SGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  T   ++ VL K GI   ++D +++E L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG + + S +L  +I  L + +G  L P  ++L+ RG+KTL  R++  ++ A ++A+ LEA   V +V+YPGL +H  H IA +QMT FGG++SFE+  D  A   F++ L+   +A S
Sbjct:   97 DVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAETKAVYF-ETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELT-DENAVKNFVENLRYFTLAES 323          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.404e-42
Identity = 85/229 (37.12%), Postives = 138/229 (60.26%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  TR +   V     +  + +D + ++ L+ A  +    L + E+PTNP L+  D+K V+D  H +GA + +D TF +P  Q  L LGAD+V+HS TK+I GH+D + G ++  +++L  +++ L + +G   +P   +L +RG+KTLH+R++     A  +   LE HPKV+RV YPGL SHP+H I  +QM G+GG+V F V G +  +  F++ +K+  +A S
Sbjct:  103 DVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKT-RLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAES 330          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.334e-42
Identity = 89/222 (40.09%), Postives = 142/222 (63.96%), Query Frame = 3
Query:   18 YRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 677
            Y  T  F+   + + G+    +D AD++ LEAA+      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS+ LV +IR   L  + G  L+P+ A L++RG+KTL+LR+ +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A  +F++AL++
Sbjct:  114 YGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQL 334          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METB_HERAU (Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 84/223 (37.67%), Postives = 136/223 (60.99%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCI-SGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 677
            D Y  T    + V+ + G++   ID AD E + AA+  N   L + E+PTNP L+   +  ++ +  + G    +D TFA+P NQ+ ++LGAD+VLHS TK+IGGH+DV+ G I + +++L  +++ L +  G    P   +L++RG+KTL +R++     AL +A+ L  HP V++V YPGL SHP+H++A +QM GFGG++S  + G   A    +   K+
Sbjct:   98 DVYGGTYRLFQRVMTEHGLSFDFIDMADPEAVRAAIKPNT-RLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFASPYNQRPITLGADMVLHSTTKYIGGHSDVVGGAIMTSNDELYEKLKFLQNAAGAVPGPFDCWLVLRGVKTLSIRMRDDERNALAIAQFLTEHPGVEKVIYPGLPSHPQHNLAREQMRGFGGMISILLKGGAEAANAMVSKTKL 319          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 85/223 (38.12%), Postives = 135/223 (60.54%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 677
            D Y         VL K G++ T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +  +   +  +D TFATP  Q  L LG D+V H+ TK++GGH+DV+AG ++  +E L  +     + +GG L    ++L+ RG+KTL LR++     AL +A+ LE HPKV+RV+YPGL +HP H +A  QM GF G+ SF +  D  A + F+++LK+
Sbjct:   96 DVYGGNFRLFNKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKEHNLLTIVDNTFATPYCQNPLLLGTDIVAHNGTKYLGGHSDVVAGLVTTNNEALAQEFDFFQNAIGGVLGLQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNHELAKAQMRGFSGMFSFTLKNDSEA-VAFVESLKL 316          
The following BLAST results are available for this feature:
BLAST of FC931572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
METB_ARATH1.739e-10981.74Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
METB_HELPY2.558e-4440.36Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METC_LACLM4.363e-4440.17Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA4.363e-4440.17Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
MCCB_BACSU9.721e-4439.39Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METC_LACLC2.828e-4340.17Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
CGL_DICDI1.404e-4237.12Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
MEGL_PSEPU5.334e-4240.09Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METB_HERAU2.027e-4137.67Probable cystathionine gamma-synthase (Fragment) O... [more]
METB_HELPJ5.897e-4138.12Cystathionine gamma-synthase OS=Helicobacter pylor... [more]

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Properties
Property NameValue
Genbank descriptionC34106F04EF PostHarvP1 Citrus clementina cDNA clone C34106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931572 ID=FC931572; Name=FC931572; organism=Citrus clementina; type=EST; length=696bp
GTGACACCACTGATTGCTACAGGAAGACTAGGATTTTCATTGAGACTGTT
CTGCCCAAAATGGGAATCACGGCTACGGTGATTGACCCAGCTGATATGGA
AGGTTTGGAGGCAGCACTCAACAATAACAATGTCTCACTATTCTTCACCG
AGTCTCCAACCAATCCATTCCTGAGATGTGTGGATGTCAAACTGGTTTCA
GATCTTTGCCATAAGAAAGGAGCAATAGTTTGCATAGATGGAACCTTTGC
CACACCTCTCAATCAGAAGGCCCTCAGCCTTGGTGCTGATCTTGTACTGC
ACTCTGCAACAAAATTCATTGGTGGCCACAATGATGTCCTTGCTGGGTGC
ATTAGTGGTTCAGAGAAGTTAGTTACACAAATTCGTAATTTGCATCATGT
TTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGAGGCA
TGAAGACATTGCATCTTCGTGTACAGCAACAAAATTCAACTGCGTTGAGG
ATGGCCAAGATTTTAGAGGCACATCCAAAGGTGAAGCGCGTTCACTATCC
AGGCTTGAAGAGTCATCCTGAGCATCACATTGCCACACAGCAAATGACTG
GTTTTGGTGGGGTAGTTAGTTTTGAGGTTGATGGAGACCTAACGGCCACC
ATAAAATTTATTGATGCCTTGAAAATCCCATATATTGCTCCATCCT
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