FC931762

Overview
NameFC931762
Unique NameFC931762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931762_ssr445 microsatellite FC931762_ssr445:445..456. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15075 contig Ccv1_Contig15075:55..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.135e-84
Identity = 154/184 (83.70%), Postives = 166/184 (90.22%), Query Frame = 2
Query:  128 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D+GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLA           RFS+AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKA ITEVKGIMMDNIEKVLDRGE+IELLVDK
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDK 184          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 108/190 (56.84%), Postives = 142/190 (74.74%), Query Frame = 2
Query:  110 LRNWKEMNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            LR  + M Q+ LIYSFV++GTV+L E+T + GNF+ +A QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA ESVGR +P  FLERVK+DF +RYG                           A +L+REFG +LKEHMQYC+ HP+E+SKL+K+KA +TEVKG+MM+NIEKVLDRGE+IELLVDK
Sbjct:   60 LRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQ-------------------ANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDK 230          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.065e-58
Identity = 107/184 (58.15%), Postives = 138/184 (75.00%), Query Frame = 2
Query:  128 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            M Q+ LIYSFV++GTV+LAE+T + GNF+++A QCLQKLP+S++K+TY+CDGHTFN+L D+GF + VV  ES GR +P  FLERVK+DF +RYG    +                      A +L++EFG +LKEHMQYC  HPEE+SKLSK+KA +TEVKG+MM+NIEKVLDRGE+IELLVDK
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAK-------------------ANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDK 165          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.231e-56
Identity = 104/184 (56.52%), Postives = 139/184 (75.54%), Query Frame = 2
Query:  128 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KA ++EVKG+MM+NIEKVLDRGE+IELLVDK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDK 165          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.969e-56
Identity = 104/184 (56.52%), Postives = 138/184 (75.00%), Query Frame = 2
Query:  128 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++ GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KA ++EVKG+MM+NIEKVLDRGE+IELLVDK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDK 165          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.393e-47
Identity = 91/185 (49.19%), Postives = 129/185 (69.73%), Query Frame = 2
Query:  128 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            M Q+  IYSFV++GT++LAE+T ++GNF +IA QCLQKLP+SS SK+TY+CD HTFNFL++ G+ + VVA +S+ + +   FLERVK DFK+RYG    +                    +IA +L++EFGP +KEHM Y + H EE+ KL K+KA ++EVK IM++NI+K +DRGE + +L DK
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKAST-------------------AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDK 166          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46
Identity = 89/181 (49.17%), Postives = 124/181 (68.51%), Query Frame = 2
Query:  128 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELL 670
            M Q+ L YSF+++GTV+L E T + GNF+++A Q L+ LP+S++K+TY+CDGHTFN L+++GF + VVA +S GR +P  FLERVK+DF +RYG      +                    A +L++EFG  LKEHMQYCM HP+E+S L+K KA ++EVK +MM+NIEKVL RG   E+L
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQ-------------------ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML 162          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 65/180 (36.11%), Postives = 106/180 (58.89%), Query Frame = 2
Query:  143 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            ++Y+ V++GTVVL+E T+ S N STIA Q L+K+P  + S  +YS D + F+     G   L +A+E+ GR +PF FLE +   F + YG ++                      ++AY ++ EF   L + + Y  + P    +++++K  + +V+G+M++NI+KVLDRGER+ELLVDK
Sbjct:    3 ILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT--------------------ALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDK 161          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 65/181 (35.91%), Postives = 109/181 (60.22%), Query Frame = 2
Query:  143 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            +I++ V++GTVVL+E ++ S N S+I+ Q L+KLP   S S  +YS D + F+     G   L +ADE+ GR++PF FL+ +   F + YG +I + +                    AY+++ EF   L + M++  + P    ++S++K  +++V+ +M++NI+KVLDRGER+ELLVDK
Sbjct:    3 IIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQ--------------------AYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDK 162          
BLAST of FC931762 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 64/180 (35.56%), Postives = 103/180 (57.22%), Query Frame = 2
Query:  143 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKY-TYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIELLVDK 679
            ++Y+ V++GTVVLAE ++ S N STIA Q L+K+P +   + +YS D + F+     G   L +ADE  GR +PF FLE +   F + YG +I + +                    AY ++ EF   L + ++Y  + P     +S++K  + +V+ +M++NI+ +LDRGER+ELLVDK
Sbjct:    3 ILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQ--------------------AYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDK 161          
The following BLAST results are available for this feature:
BLAST of FC931762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA727_ARATH1.135e-8483.70Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA725_ARATH1.397e-5856.84Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA726_ARATH4.065e-5858.15Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH2.231e-5656.52Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH4.969e-5656.52Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH9.393e-4749.19Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH4.662e-4649.17Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA711_ARATH1.842e-2636.11Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH9.140e-2635.91Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA712_ARATH1.011e-2435.56Vesicle-associated membrane protein 712 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC34108F10EF PostHarvP1 Citrus clementina cDNA clone C34108F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931762 ID=FC931762; Name=FC931762; organism=Citrus clementina; type=EST; length=695bp
AACCCCGCGGAGTCTTCGACTTCAACTCTAAGCAAACAATCAACCGTCTC
CAGATTCTCTCTCTTTGTTCCTCGATTCGAAATTCATCCGGCGGCTTTCT
TTTCCGGAATTGAGAAATTGGAAAGAAATGAATCAGAAAGGGTTGATTTA
CAGCTTTGTTTCGAAAGGCACTGTCGTTTTAGCCGAGCACACGTCGTATT
CCGGAAATTTCAGTACCATTGCCATTCAATGTTTACAGAAATTGCCTGCG
AGTAGTAGCAAGTACACGTATTCATGCGATGGCCACACTTTTAACTTCCT
CCTCGACTCTGGATTCGTATTTCTGGTTGTTGCTGATGAATCGGTTGGGA
GAAGTGTGCCGTTTGTTTTTCTCGAACGAGTCAAGGATGATTTTAAACAG
CGGTATGGGGCGAGTATTCAGAATGAGGAATCACACCCCCTTGCTGATGA
TGATGAGGATGATGATTTGTTTGAAGATCGATTTAGCATTGCCTATAATC
TTGACAGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAGTATTGTATG
AGCCACCCTGAGGAGATGAGCAAGCTTTCCAAATTAAAGGCTNCAATAAC
TGAGGTCAAGGGGATTATGATGGACAATATTGAGAAGGTTTTGGATCGTG
GGGAGAGGATTGAGCTACTGGTGGATAAACAGAGAACCTGCATTC
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