FC931802

Overview
NameFC931802
Unique NameFC931802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931802_ssr67 microsatellite FC931802_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15242 contig Ccv1_Contig15242:14..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: C3H41_ORYSJ (E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica GN=MKRN PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 82/182 (45.05%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYASRCRYEHVK---------PXXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELSALSRPFL------PPNKTAWNPESVCNDSLE---NDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +KRVLCKFF HGACLKGE+CEFSHDW D PNN+CT+YQKG CSY SRCRY+HVK         P                       +     +      +S   L      P  +  +  ESV  D ++   +  V     L PAD  ICSFAA GNCP GE+CP +HGD C TCGK CLH
Sbjct:    3 TKRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGSRCRYDHVKVSRNPTVAPPPSSSTTTRASSSLQPLSFGRPHHVGYQADSSNPRQQISMDVLAHSGSKPVWRNDFQHESVLEDGIDWSISPTVQNQTTLSPADLPICSFAAGGNCPYGEECPQMHGDLCTTCGKMCLH 184          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: C3H35_ARATH (E3 ubiquitin-protein ligase makorin OS=Arabidopsis thaliana GN=MKRN PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 75/168 (44.64%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  193 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRN---LKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            MS R+LCKFF HG+CLKGE+CEFSHD KDPPNN+CT+YQK  C Y SRCRY+HV+                              A   L   S         +  P        +N++ D+  N   + P +  ICSFAAAG+CPRG +CPH+HGD C TCGK CLH
Sbjct:    1 MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVR------------------------------AASNLPLSSDSESLDRSISTTPSRHLQQQGDNNDGDKSSNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLH 138          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN1_HUMAN (E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 54/191 (28.27%), Postives = 86/191 (45.03%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELS---ALSR------------------PFLPPNKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K+V C++F HG C +G++C +SHD  D P + +C Y+Q+G+C Y  RCRYEH KP                       ++ + G + E++   A SR                   F+P           C +     S+  +E ++ +      + +C +AA G C  GE C ++HGD+C  CG   LH
Sbjct:   56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKP-LKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLH 245          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN1_MOUSE (E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 54/191 (28.27%), Postives = 84/191 (43.98%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELS---ALSR------------------PFLPPNKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K+V C++F HG C +G++C +SHD  D P   +C Y+Q+G+C Y  RCRYEH KP                       ++   G++ E++   A SR                   F+P           C +     S+  +E ++        + +C +AA G C  GE C ++HGD+C  CG   LH
Sbjct:   56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYFQRGYCVYGDRCRYEHSKP-LKQEEVTATDLSAKPSLAASSSLSSGVGSLAEMNSGEAESRNPSFPTVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEVPPQGSVTKEESEKEPTTVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLH 245          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN2_DANRE (Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio GN=mkrn2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 60/203 (29.56%), Postives = 83/203 (40.89%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELSA---LSRPFLPPNKTAWNPESVCNDSLENDEVDE-----------PRNLKPADRS------------------------ICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K+V C++F HG C +G  C FSHD     P+ IC YYQ+G C+Y  RCRY+H+KP                           PG  P  +    L +P +  +K   +       S E+ E++E           P +   A RS                        IC F AAG C  GE CP++HG+ C  C +  LH
Sbjct:    3 TKQVTCRYFLHGVCREGSRCLFSHDLTTSKPSTICKYYQRGACAYGDRCRYDHIKPPGRGSGAPADHSNRSSSSAG----ASAPGPGPPANTSKHLKKPLVLRDKALCSDSRPRVFSAESSELNECWEQRDDGAQKPHSYLEAIRSGLDASAAAAATAGTFPELQQTSPQICPFLAAGQCQYGESCPYLHGEMCEICRQHVLH 201          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN2_XENLA (Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis GN=mkrn2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.776e-19
Identity = 56/200 (28.00%), Postives = 80/200 (40.00%), Query Frame = 1
Query:  199 KRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELSALSRPFLP-----PNKT-AWNPESVCNDSLEN------------------------------DEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            K+V C++F HG C +G  C FSHD     P+ +C ++ +G C+Y +RCRY+HVKP                       +   P   P   A   P +P       KT       +C  S++                               DE  +P +   A + +C FA AG C  G+ CP++HGD C  CG   LH
Sbjct:    4 KQVTCRYFLHGVCREGSRCLFSHDLATSKPSTVCRFFLRGQCAYGTRCRYDHVKPCNGTVFIPPQEMSP---------VLSPPPLFPAQEAAVPPTIPAPQRREKKTLVLRDRDLCGASVDPALQPGCITESQGSEGEAKPHSYLEAICTGLDESQDPASYPGAPQQLCPFAQAGECHCGDSCPYLHGDACEICGLQVLH 194          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN1_SERQU (Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola quinqueradiata GN=mkrn1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.776e-19
Identity = 57/177 (32.20%), Postives = 78/177 (44.07%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGFCSYASRCRYEHVKP------XXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELSALSRPFLPPNKTAWNPESVCNDSL-----ENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K V C++F HG C +G++C +SHD  +  P   IC ++QKG C +  RCR+EH KP                            G T VPGA   ++A    F+P        E    +S      E D    P N K   + +C +AA G C  G  C ++HGD C  CG   LH
Sbjct:   19 TKHVTCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGDRCRFEHCKPAKNEELPAPQMLPLPSASLAGPSDPEPSGPTPVPGAQDWVNAAE--FVPGQPYCGRAEQAKVESSVPLIEEFDSYPAPDN-KQLRKQLCPYAAVGECRYGINCAYLHGDVCYMCGLQVLH 192          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN2_MOUSE (Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus GN=Mkrn2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 61/203 (30.05%), Postives = 87/203 (42.86%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXG------ITKV-------PGAMPE---------LSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K+V C++F HG C +G  C FSHD  +  P+ IC YYQKG+C+Y +RCRY+H KP                              T V       PG   +         L+ L+    PP+K   N    C+D   + E+ +P +   A R+                +C +AAAG C  G+ C ++HGD C  C    LH
Sbjct:    3 TKQVTCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPPAAAGGAVGPAPNPSPSSGLHSPHPSPDIATSVMRTHSNEPGKREKKTLVLRDRNLTGLAEDKTPPSKV--NNPGGCSDPQTSPEM-KPHSYLDAIRTGLDDLEASSSYSNEPQLCPYAAAGECRLGDACVYLHGDMCEICRLQVLH 202          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN1_MACEU (E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 51/194 (26.29%), Postives = 80/194 (41.24%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGITKVPGAMPELSALSR------------------------PFLPPNKTAWNPESVCNDS-----LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K+V C++F HG C KG +C +SHD     +  +C YYQ+G C+Y  RCRYEH KP                        + +P  +  L+ +S                          F+P           C ++     +  +E+++ +      + +C +AA G C  GE C ++HGD C  CG   LH
Sbjct:   52 TKQVTCRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEHTKP----LKREEVTAANLAAKSDLPASSSLPALVEPLAEVSTGEAESVNSNFAAAGAGGEDWVNAIEFVPGQPYCGRAAPSCTEAPLQGMVIEEELEKQQTNVEMKKQLCPYAAVGECRYGENCVYLHGDACDMCGLQVLH 241          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN2_SERQU (Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola quinqueradiata GN=mkrn2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 57/201 (28.36%), Postives = 82/201 (40.80%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYASRCRYEHVKPXXXXXXXXXXXXXXXXXXXXXXGI--------TKVPGAMPE----------LSALSRPFLPPNKTAWNPESVCN-------------DSLENDEVDEP-----RNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K+V C++F HG C +G  C FSHD  +  P+ IC +YQ+G C+Y  RCRY+H+KP                      G           V G M +          +  + R F  P  + W+  S                D+   D+   P     +NL      +C +AA G+C   E C ++HGD C  CG   LH
Sbjct:    3 TKQVTCRYFLHGVCREGSRCLFSHDLNNSKPSTICKFYQRGVCAYGERCRYDHIKPSSRGGGGGAPEDQAGGGGAGGGGAGIGGAGGGPSVRGGMKKNLVLRDRVLGVDRVDRMFGAPADSMWSDVSTAAAPHSYVEAIRTGLDASAQDQATPPVCGPSQNLP----QLCPYAANGHCFYEENCTYLHGDLCEVCGLQVLH 199          
The following BLAST results are available for this feature:
BLAST of FC931802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
C3H41_ORYSJ1.209e-3845.05E3 ubiquitin-protein ligase makorin OS=Oryza sativ... [more]
C3H35_ARATH1.930e-3644.64E3 ubiquitin-protein ligase makorin OS=Arabidopsis... [more]
MKRN1_HUMAN1.137e-2028.27E3 ubiquitin-protein ligase makorin-1 OS=Homo sapi... [more]
MKRN1_MOUSE7.368e-2028.27E3 ubiquitin-protein ligase makorin-1 OS=Mus muscu... [more]
MKRN2_DANRE3.657e-1929.56Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN2_XENLA4.776e-1928.00Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN1_SERQU4.776e-1932.20Probable E3 ubiquitin-protein ligase makorin-1 OS=... [more]
MKRN2_MOUSE1.815e-1830.05Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN1_MACEU3.095e-1826.29E3 ubiquitin-protein ligase makorin-1 OS=Macropus ... [more]
MKRN2_SERQU6.896e-1828.36Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34201D02EF PostHarveN Citrus clementina cDNA clone C34201D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931802 ID=FC931802; Name=FC931802; organism=Citrus clementina; type=EST; length=689bp
GAAATTCACGTGCCCCCTTCATTGTCGCTTCAATTTCTCTCTCCCCATTT
TAGCTTTCCATTAAAACAATCAATCAATTGAATGATTTTAAGTTTCTAGG
GTTTCAATTGATTCATCGGAAGCAAATAAAAAGGACTCGTTTCGAACACT
TTAATTTATTTGCGTCTTTCACAAATTCAAGAACGACACGACATGTCCAA
GAGGGTCCTTTGCAAGTTCTTTGCTCATGGAGCATGTCTGAAAGGCGAGC
ATTGTGAATTTTCACATGATTGGAAGGATCCACCGAATAATATATGCACT
TATTATCAGAAAGGGTTCTGCTCTTATGCTAGTCGGTGCAGATATGAGCA
TGTCAAACCTTCTCGGTCAGAGTTGGCTGCTTCATCTTCCTCATCAGTTT
CTCATCCTTCAAGAGCTACATCAAGTGGGATAACTAAAGTTCCAGGTGCC
ATGCCAGAGCTATCTGCATTGAGTAGACCTTTTCTTCCTCCTAACAAGAC
AGCATGGAATCCGGAGTCTGTGTGCAATGATTCTTTAGAGAATGATGAGG
TTGACGAGCCCAGGAATCTAAAACCTGCTGACCGTTCTATCTGTTCATTT
GCTGCTGCTGGTAATTGTCCTCGTGGGGAAAAATGTCCTCATATTCATGG
AGACACATGCCCAACTTGTGGGAAAGCATGCTTGCATCC
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