FC931820

Overview
NameFC931820
Unique NameFC931820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931820 vs. ExPASy Swiss-Prot
Match: SDCG1_MOUSE (Serologically defined colon cancer antigen 1 homolog OS=Mus musculus GN=Sdccag1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.013e-30
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 3
Query:   12 PSRMFYKFGIVM*VCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHKENSDIES-EKDDTDEKPVAESFSVP 401
            P R   + G  M +C+S AWD++++TSAWWVY HQVSKTAPTGEYLT GSFMIRGKKNFLPP  L+MGF  LF++DES +  H  ER+VR ++E M+            ++E  E  D+ E+   E   +P
Sbjct:  584 PPRTLTEAG-TMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHRGERKVRVQDEDMETLTSCTSELMAEEMEQLEGGDSSEEETEELHGMP 713          
BLAST of FC931820 vs. ExPASy Swiss-Prot
Match: SDCG1_HUMAN (Serologically defined colon cancer antigen 1 OS=Homo sapiens GN=SDCCAG1 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   12 PSRMFYKFGIVM*VCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHKENSDIES-EKDDTDEKPVAESFSVP 401
            P R   + G  M +C+S AWD++++TSAWWVY HQVSKTAPTGEYLT GSFMIRGKKNFLPP  L+MGF  LF++DES +  H  ER+VR ++E M+          + ++E  +  DT      E    P
Sbjct:  586 PPRTLTEAG-TMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHQGERKVRVQDEDMETLASCTSELISEEMEQLDGGDTSSDEDKEEHETP 715          
BLAST of FC931820 vs. ExPASy Swiss-Prot
Match: YJY1_SCHPO (Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe GN=SPCC132.01c PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 3
Query:   60 SQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESS 248
            S+AWDSK V SAWWV   +VSK APTGE L  GSF IR KKN+LPP  LIMG+G+L++LDE S
Sbjct:  639 SKAWDSKTVISAWWVRIDEVSKLAPTGEILPTGSFAIRAKKNYLPPTVLIMGYGILWQLDEKS 701          
The following BLAST results are available for this feature:
BLAST of FC931820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SDCG1_MOUSE6.013e-3050.38Serologically defined colon cancer antigen 1 homol... [more]
SDCG1_HUMAN2.984e-2949.62Serologically defined colon cancer antigen 1 OS=Ho... [more]
YJY1_SCHPO2.006e-1766.67Uncharacterized protein C132.01c OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionC34201E09EF PostHarveN Citrus clementina cDNA clone C34201E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931820 ID=FC931820; Name=FC931820; organism=Citrus clementina; type=EST; length=690bp
ACTCACGTTAACCAAGCAGGATGTTTTACAAATTTGGTATTGTGATGTAG
GTCTGCCACAGCCAGGCATGGGATTCAAAGATGGTCACTAGCGCTTGGTG
GGTTTATCCTCACCAAGTTAGTAAAACTGCTCCCACAGGAGAATATCTTA
CAGTTGGGAGCTTCATGATTCGTGGGAAGAAGAATTTTCTTCCTCCACAT
CCACTTATTATGGGCTTTGGATTGTTATTCCGCTTGGATGAGAGCTCCTT
AGGGTCGCATTTAAATGAAAGGAGGGTTCGAGGTGAGGAGGAAGGAATGG
ATGATTTCGAAGATAGTGGACATCACAAAGAGAATTCTGATATTGAGTCA
GAGAAAGATGACACAGATGAAAAACCTGTAGCAGAAAGCTTCTCTGTACC
TAATTCTGCTCATCCTGCCCCGAGTCATACAAATGCTAGTAATGTTGATT
CTCATGAATTTCCTGCTGAAGACAAAACTATCTCAAATGGTATTGATAGT
AAGATATCTGATATTGCGAGAAATGTTGCTGCTCCAGTCACCCCACAACT
TGAAGATCTCATTGATAGGGCTCTTGGGCTTGGATCTGCTTCTATATCCA
GTACAAAACATGGGATTGAAACGACTCAGTTTGATTTGTCAGAGGAAGAT
AAGCATGTCGAGAGGACTGCTACAGTCAGAGATAAACCTT
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