FC931850

Overview
NameFC931850
Unique NameFC931850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.661e-21
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 2
Query:    5 INVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            +N++KLW+LVPAE R+ Y+SG  T+ APVIDLL  GY+K+LGKGRLPQ+P+VVRARYVS +AE KIK
Sbjct:   73 LNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQVPIVVRARYVSAEAERKIK 139          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL27A_ERYGR (60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.661e-21
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    5 INVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKI 202
            +N++KLWSL+PAE+R+ YLS    DV PVIDLLPLGYSKVLGKGR+P++P+VVRAR+ S++AE KI
Sbjct:   73 LNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPKVPLVVRARWFSKEAERKI 138          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 4.248e-19
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 2
Query:    2 TINVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            T+N+D+LW+L+P E RD YL G+ T+VAPVI++L  GY KVLGKGRLP+ PV+V+ RYVSR AEEKIK
Sbjct:   72 TVNLDRLWTLLPNEARDKYL-GKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIK 138          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.236e-18
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 2
Query:    2 TINVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            T+N+D+LW+LVP E R+ YL G+ T+VAPVI++L  GY KVLGKGRLP  PV+++ RYVSR AEEKIK
Sbjct:   72 TVNLDRLWTLVPNETREKYL-GKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIK 138          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 8.012e-18
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 2
Query:    5 INVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            +N+DKLW+L+P ++RD YL     + APVID L  GY K+LGKGR+P +PV+V+AR+VS+ AEEKI+
Sbjct:   73 LNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIR 139          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.414e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 TINVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            T+N+DKLW+LV +EQ  V  +  KT  AP+ID++  GY KVLGKG+LP+ PV+V+A++ SR AEEKIK
Sbjct:   72 TVNLDKLWTLV-SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.414e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 TINVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            T+N+DKLW+LV +EQ  V  +  KT  AP+ID++  GY KVLGKG+LP+ PV+V+A++ SR AEEKIK
Sbjct:   72 TVNLDKLWTLV-SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.414e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 TINVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            T+N+DKLW+LV +EQ  V  +  KT  AP+ID++  GY KVLGKG+LP+ PV+V+A++ SR AEEKIK
Sbjct:   72 TVNLDKLWTLV-SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.414e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 TINVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            T+N+DKLW+LV +EQ  V  +  KT  AP+ID++  GY KVLGKG+LP+ PV+V+A++ SR AEEKIK
Sbjct:   72 TVNLDKLWTLV-SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138          
BLAST of FC931850 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.414e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 TINVDKLWSLVPAEQRDVYLSGQKTDVAPVIDLLPLGYSKVLGKGRLPQIPVVVRARYVSRDAEEKIK 205
            T+N+DKLW+LV +EQ  V  +  KT  AP+ID++  GY KVLGKG+LP+ PV+V+A++ SR AEEKIK
Sbjct:   72 TVNLDKLWTLV-SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK 138          
The following BLAST results are available for this feature:
BLAST of FC931850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL28_NEUCR2.661e-2168.6660S ribosomal protein L28 OS=Neurospora crassa GN=... [more]
RL27A_ERYGR2.661e-2168.1860S ribosomal protein L27a OS=Erysiphe graminis su... [more]
RL28A_SCHPO4.248e-1966.1860S ribosomal protein L28-A OS=Schizosaccharomyces... [more]
RL28B_SCHPO1.236e-1864.7160S ribosomal protein L28-B OS=Schizosaccharomyces... [more]
RL28_YEAST8.012e-1856.7260S ribosomal protein L28 OS=Saccharomyces cerevis... [more]
RL27A_PONAB1.414e-1457.3560S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]
RL27A_PANTR1.414e-1457.3560S ribosomal protein L27a OS=Pan troglodytes GN=R... [more]
RL27A_MACFA1.414e-1457.3560S ribosomal protein L27a OS=Macaca fascicularis ... [more]
RL27A_HUMAN1.414e-1457.3560S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
RL27A_BOVIN1.414e-1457.3560S ribosomal protein L27a OS=Bos taurus GN=RPL27A... [more]

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Properties
Property NameValue
Genbank descriptionC34201H03EF PostHarveN Citrus clementina cDNA clone C34201H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931850 ID=FC931850; Name=FC931850; organism=Citrus clementina; type=EST; length=454bp
CACTATCAACGTCGATAAGCTCTGGTCTCTTGTCCCCGCTGAGCAGCGCG
ACGTCTACTTGAGCGGCCAGAAGACCGATGTCGCCCCCGTCATCGACCTC
CTGCCTCTCGGCTACTCTAAGGTTCTTGGAAAGGGCCGTCTCCCCCAGAT
CCCCGTCGTCGTCCGTGCCCGTTACGTCAGCCGTGACGCCGAGGAGAAGA
TTAAGGCCGCCGGTGGTGTTGTTGAGCTCGTCGCATAAGCGTTGATTCGT
CGAGAAATTTCTGGAGAAGGCGGGTGAATAGGGGCAATCTGAAGCCCTGG
CTGTGTTCGTTCGCCAGCATGGAGGACGATCGGAACTCAAAATGAGATCT
GCCGGAACTGAAAGTAAGTCGGTTCGTGCGGTCGAAAAAAAGGGGTTTTT
TTTTGTATGCACCAGCACAGCATATGGCCTCCGAATGCCCTTACGATTTC
ATCA
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