FC931915

Overview
NameFC931915
Unique NameFC931915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8957 contig Ccv1_Contig8957:117..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 53/148 (35.81%), Postives = 87/148 (58.78%), Query Frame = 2
Query:  182 STLQDTTVQTKPEQTQKQNIRR-KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-------QHKLYVSNLSWKVRSTHLREFFS 598
            S  ++  ++ K E+ + +++   ++YV NLP+S + +++  +FA  GTV +VEI+  +   ++R FAFVTM S EEA+ A+  FD  +V GR ++V F  +  +   +   SA  R T        HKLYV+NLSW + S  LR+ F+
Sbjct:   92 SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF-PEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFA 238          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            K++V NLP+S   A +  LF   G V  VE+I  K  G++R F FVTM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ +++YV NLSW V    L+E FS   N V +++
Sbjct:   89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKV 239          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            KI+V NLP+S   A +  LF   G V  VE+I  K  G++R F FVTM+S EE +AA  QF+  E+ GR +RV        P P++  ++  R         ++ +++YV NL+W V    L   FS     V +++
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKV 219          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            K++V NLP+S   A +  LF   G V  VE+I  K  G++R F FVTM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ +++YV NLSW V    L+E FS   N V +++
Sbjct:   88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKV 238          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  218 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            E+ Q+     K++V NLP+      +  LF   G V   E+I ++   ++R F FVTM++ EEA+ AV  ++  +V+GR++ V  A + +  RP+R    P R  E  +++YV N+ W +    L + FS +   VS+R+
Sbjct:  127 EEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARV 261          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 68/238 (28.57%), Postives = 104/238 (43.70%), Query Frame = 2
Query:   20 LEAAATSIFLTNY-----------PFSFSCLFPKLPHCIKLLHSSNSTPSLI--YNFPTRNVCLQVCSTLQ-----DTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSAS--------APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            + A+A+S+ L+++           P S S L P L      L+S + + S+   +N P       V  T +     D      P + Q  +   K++V NLP++   A++  LF   G V  VE+I  K  G++R F FVTM+S  E +AA  QF+  E+ GR +RV       K        PR    +S             + +++YV NLSW V    L   FS     V +R+
Sbjct:    1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSF---KLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 2
Query:  218 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            E+ Q+ +   K++V NLP+      +  LF   G V   E+I ++   ++R F FVTM++ EEA  AV  +   +++GR++ V  A     PR  R   AP   +  +++YV N+ W +    L + FS +   VS+R+
Sbjct:   88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKA----APRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARV 222          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            K++V NL +  +   +  LF   GTV   E+I ++   ++R F FVTM+S +EA+ AV +F+  +++GR++ V  A     PR  R   AP   E   ++YV NL W V +  L + FS +   V +R+
Sbjct:  151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA----APRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARV 275          
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628
            KI+V NL +S   A +  LF   G V  VE+I  K  G++R F FVTM+S EE +AA  QF+  E+ GR +RV        P P++  ++  RE               + +++YV NL+W V    L   FS     V +++
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKV 225          
The following BLAST results are available for this feature:
BLAST of FC931915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ROC5_NICSY7.312e-1835.8133 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL5.423e-1333.7731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY5.423e-1335.0429 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC2_NICSY9.250e-1333.7729 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC4_NICSY2.061e-1232.1431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH3.515e-1228.57Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC3_NICSY7.830e-1230.9428 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.336e-1134.1131 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICPL1.744e-1133.5730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
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Properties
Property NameValue
Genbank descriptionC34202E10EF PostHarveN Citrus clementina cDNA clone C34202E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931915 ID=FC931915; Name=FC931915; organism=Citrus clementina; type=EST; length=711bp
GAAACGAACCATGGCAGCGTTAGAAGCAGCAGCAACGTCAATCTTCTTAA
CCAACTACCCTTTTTCGTTTTCGTGCTTATTTCCCAAACTACCGCACTGT
ATAAAGCTCCTCCATTCTTCCAATTCTACTCCTTCACTTATCTATAATTT
TCCAACACGAAATGTTTGCCTTCAAGTATGCTCAACTTTGCAAGACACAA
CAGTACAAACAAAACCAGAACAAACACAGAAACAGAATATAAGGAGAAAG
ATATATGTGTTTAATTTGCCTTGGTCTTTCTCTGTTGCAGAAATCAAGAA
TCTCTTTGCCCCATGTGGAACTGTTGTAGATGTTGAGATTATAAAGCACA
AAGGTGGGAAAAACAGAAACTTTGCATTTGTGACAATGGCTTCGCCGGAA
GAAGCTCAGGCTGCCGTTAATCAATTCGACACTCAGGAAGTCTCTGGGAG
GATTATAAGGGTTGAGTTTGCAAAGAAATTCAAGAAACCACGACCTCAAC
GTTCTGCAAGTGCCCCTGCTAGAGAAACACAACATAAGCTTTATGTGTCG
AATCTTTCTTGGAAAGTTAGATCTACTCATCTCAGAGAATTTTTTTCAGC
TAATTTTAATCCTGTTTCCTCCAGGTTGTTTTTGAGAGCAATGAAGGAGA
TCCGCTGGGTATGGCTTTGTCTCATTTGCCCACAAGGAGAAGCAGAAGCA
GCAATTTCTCT
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