FC931915
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18 Identity = 53/148 (35.81%), Postives = 87/148 (58.78%), Query Frame = 2 Query: 182 STLQDTTVQTKPEQTQKQNIRR-KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-------QHKLYVSNLSWKVRSTHLREFFS 598 S ++ ++ K E+ + +++ ++YV NLP+S + +++ +FA GTV +VEI+ + ++R FAFVTM S EEA+ A+ FD +V GR ++V F + + + SA R T HKLYV+NLSW + S LR+ F+ Sbjct: 92 SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF-PEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFA 238
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13 Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 2 Query: 248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 K++V NLP+S A + LF G V VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ +++YV NLSW V L+E FS N V +++ Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKV 239
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13 Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 2 Query: 248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 KI+V NLP+S A + LF G V VE+I K G++R F FVTM+S EE +AA QF+ E+ GR +RV P P++ ++ R ++ +++YV NL+W V L FS V +++ Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKV 219
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13 Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 2 Query: 248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 K++V NLP+S A + LF G V VE+I K G++R F FVTM++ EE +AA QF+ E+ GR IRV + R S+ AR ++ +++YV NLSW V L+E FS N V +++ Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKV 238
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12 Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = 2 Query: 218 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 E+ Q+ K++V NLP+ + LF G V E+I ++ ++R F FVTM++ EEA+ AV ++ +V+GR++ V A + + RP+R P R E +++YV N+ W + L + FS + VS+R+ Sbjct: 127 EEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARV 261
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12 Identity = 68/238 (28.57%), Postives = 104/238 (43.70%), Query Frame = 2 Query: 20 LEAAATSIFLTNY-----------PFSFSCLFPKLPHCIKLLHSSNSTPSLI--YNFPTRNVCLQVCSTLQ-----DTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSAS--------APARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 + A+A+S+ L+++ P S S L P L L+S + + S+ +N P V T + D P + Q + K++V NLP++ A++ LF G V VE+I K G++R F FVTM+S E +AA QF+ E+ GR +RV K PR +S + +++YV NLSW V L FS V +R+ Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSF---KLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 2 Query: 218 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 E+ Q+ + K++V NLP+ + LF G V E+I ++ ++R F FVTM++ EEA AV + +++GR++ V A PR R AP + +++YV N+ W + L + FS + VS+R+ Sbjct: 88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKA----APRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARV 222
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11 Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 2 Query: 248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 K++V NL + + + LF GTV E+I ++ ++R F FVTM+S +EA+ AV +F+ +++GR++ V A PR R AP E ++YV NL W V + L + FS + V +R+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA----APRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARV 275
BLAST of FC931915 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11 Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = 2 Query: 248 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSRL 628 KI+V NL +S A + LF G V VE+I K G++R F FVTM+S EE +AA QF+ E+ GR +RV P P++ ++ RE + +++YV NL+W V L FS V +++ Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKV 225 The following BLAST results are available for this feature:
BLAST of FC931915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931915 ID=FC931915; Name=FC931915; organism=Citrus clementina; type=EST; length=711bpback to top |