FC931941

Overview
NameFC931941
Unique NameFC931941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15314 contig Ccv1_Contig15314:3..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHLY_HEVBR (Hevamine-A OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 2.850e-86
Identity = 156/213 (73.24%), Postives = 174/213 (81.69%), Query Frame = 3
Query:   18 MARNSPAIATFVSLLVTLSLIKASQ--GAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            MA+ + AI   + LL+ +SLI +S     GGIAIYWGQNG+EGTLT TC+T KY+YVNIAFLNKFGNGQTP+INLAGHCNPAAGGC +VS+ I+SCQ +GIKVM                DAKNVADYLWNNFLGG SSSRPLG AVLDGIDFDIE GSTL+WDDLAR+LSAYS +GKKVYLTAAPQCPFPDR+LG ALNTGLFDYVWVQFYN
Sbjct:    1 MAKRTQAI---LLLLLAISLIMSSSHVDGGGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVWVQFYN 210          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIT3_VITVI (Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.160e-79
Identity = 150/214 (70.09%), Postives = 165/214 (77.10%), Query Frame = 3
Query:   18 MARNSPAIATFVSLLVTLSLIKASQGAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSA---YSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            MAR   +    +SL V L+L++ S  AGGIAIYWGQNG+EGTLT TC TGKY+YVNIAFLNKFGNGQTPEINLAGHCNPA+ GC  VS  I++CQ+RGIKVM                DA+NVA+YLWNNFLGG SSSRPLG AVLDGIDFDIE GSTLHWDDLAR LS       RG+KVYLTAAPQCPFPD+  G ALNTGLFDYVWVQFYN
Sbjct:    1 MARTPQSTPLLISLSV-LALLQTSY-AGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLAGHCNPASNGCTSVSTGIRNCQNRGIKVMLSIGGGAGSYSLSSSNDAQNVANYLWNNFLGGQSSSRPLGDAVLDGIDFDIELGSTLHWDDLARALSRIEFQQERGRKVYLTAAPQCPFPDKVPGTALNTGLFDYVWVQFYN 212          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIA_ARATH (Acidic endochitinase OS=Arabidopsis thaliana GN=CHIB1 PE=2 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 3.156e-75
Identity = 133/197 (67.51%), Postives = 151/197 (76.65%), Query Frame = 3
Query:   63 VTLSLIKASQGA-GGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            ++ SL K S  + GGIAIYWGQNG+EG L++TCATG+YAYVN+AFL KFGNGQTPE+NLAGHCNPAA  C      +K CQSRGIKVM                DAK +ADYLWNNFLGG SSSRPLG AVLDGIDF+IE GS  HWDDLAR LS +S RG+K+YLT APQCPFPDR +G+ALNT  FDYVW+QFYN
Sbjct:   17 ISCSLSKPSDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFPDRLMGSALNTKRFDYVWIQFYN 213          

HSP 2 Score: 24.2534 bits (51), Expect = 3.156e-75
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  650 HPPCPYSSGIPRNL 691
            +PPC YSSG  +NL
Sbjct:  214 NPPCSYSSGNTQNL 227          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIA_TOBAC (Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.071e-66
Identity = 122/202 (60.40%), Postives = 148/202 (73.27%), Query Frame = 3
Query:   45 TFVSLLVTLSLIKASQGAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            +F+   + L L      AG I IYWGQNG+EG+L  TCAT  YA VNIAFL  FGNGQ P +NLAGHC+P AG C  +S+ I++CQ++GIKVM                DA+NVA+YLWNN+LGG S++RPLG AVLDGIDFDIE G+T HWD+LA+ LS +S + +KVYLTAAPQCPFPD +L  AL+TGLFDYVWVQFYN
Sbjct:    5 SFLLTALVLFLRALKLEAGDIVIYWGQNGNEGSLADTCATNNYAIVNIAFLVVFGNGQNPVLNLAGHCDPNAGACTGLSNDIRACQNQGIKVMLSLGGGAGSYFLSSADDARNVANYLWNNYLGGQSNTRPLGDAVLDGIDFDIEGGTTQHWDELAKTLSQFSQQ-RKVYLTAAPQCPFPDTWLNGALSTGLFDYVWVQFYN 205          

HSP 2 Score: 21.9422 bits (45), Expect = 4.071e-66
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  650 HPPCPYSSGIPRNL 691
            +PPC YS G   NL
Sbjct:  206 NPPCQYSGGSADNL 219          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIA_PHAAN (Acidic endochitinase OS=Phaseolus angularis PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 116/197 (58.88%), Postives = 137/197 (69.54%), Query Frame = 3
Query:   60 LVTLSLIKASQGAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            L+ +S  K S  AGGI++YWGQNG+EG+L   C TG Y YVNIAFL  FG GQTP++NLAGHCNP+   C V SD IK CQS+ IKV+                DA  VA+Y+WNNFLGG SSSRPLG A+LDG+DFDIE G+  HWDDLAR L  ++S   ++ LTAAPQCP PD  L  A+ TGLFD VWVQFYN
Sbjct:   18 LLFISFFKPSH-AGGISVYWGQNGNEGSLADACNTGNYKYVNIAFLFTFGGGQTPQLNLAGHCNPSINNCNVFSDQIKECQSKDIKVLLSLGGASGSYSLTSADDATQVANYIWNNFLGGQSSSRPLGDAILDGVDFDIESGTGEHWDDLARALKGFNS---QLLLTAAPQCPIPDAHLDTAIKTGLFDIVWVQFYN 210          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIA_CICAR (Acidic endochitinase OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.895e-62
Identity = 113/197 (57.36%), Postives = 143/197 (72.59%), Query Frame = 3
Query:   60 LVTLSLIKASQGAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            L+ +SL+  S  A GIA+YWGQNG+EG+L   C T  Y +VNIAFL+ FGNGQ P+INLAGHC+P+  GC   S  I++CQ++GIKV+                +A  +A+YLWNNFLGGTS+SRPLG AVLDGIDFDIE G   H+D+LA+ L+ +S   +KVYL+AAPQCP+PD  L +A+ TGLFDYVWVQFYN
Sbjct:   11 LLLISLLIKSSNAAGIAVYWGQNGNEGSLQDACNTNNYQFVNIAFLSTFGNGQNPQINLAGHCDPSTNGCTKFSPEIQACQAKGIKVLLSLGGGAGSYSLNSAEEATTLANYLWNNFLGGTSTSRPLGDAVLDGIDFDIESGGQ-HYDELAKALNGFSQ--QKVYLSAAPQCPYPDAHLDSAIQTGLFDYVWVQFYN 204          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIB_TOBAC (Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.173e-61
Identity = 116/198 (58.59%), Postives = 139/198 (70.20%), Query Frame = 3
Query:   57 LLVTLSLIKASQGAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            L + L L+ +   AG I +YWGQ+  EG L  TC +G Y  VNIAFL+ FGN QTP++NLAGHC P++GGC+ ++ +I+ CQS GIK+M                DA+ VADYLWNNFLGG SS RPLG AVLDGIDFDIE G   H+  LAR LS +  +GKK+YLTAAPQCPFPD+ L  AL TGLFDYVWVQFYN
Sbjct:   11 LPIFLLLLTSKVKAGDIVVYWGQDVGEGKLIDTCNSGLYNIVNIAFLSSFGNFQTPKLNLAGHCEPSSGGCQQLTKSIRHCQSIGIKIMLSIGGGTPTYTLSSVDDARQVADYLWNNFLGGQSSFRPLGDAVLDGIDFDIELGQP-HYIALARRLSEHGQQGKKLYLTAAPQCPFPDKLLNGALQTGLFDYVWVQFYN 207          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIA_CUCSA (Acidic endochitinase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.173e-61
Identity = 116/204 (56.86%), Postives = 140/204 (68.63%), Query Frame = 3
Query:   39 IATFVSLLVTLSLIKASQGAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            I T +S+   LS I  S  A GIAIYWGQNG+EG+L STCATG Y +VNIAFL+ FG+GQ P +NLAGHCNP   GC  +SD I SC+S+ +KV+                DAK VA+++WN++LGG S SRPLGAAVLDG+DFDIE GS   WD LA+ L  +     +V L+AAPQCP PD  L AA+ TGLFD VWVQFYN
Sbjct:    6 ITTTLSIFFLLSSIFRSSDAAGIAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQAPVLNLAGHCNPDNNGCAFLSDEINSCKSQNVKVLLSIGGGAGSYSLSSADDAKQVANFIWNSYLGGQSDSRPLGAAVLDGVDFDIESGSGQFWDVLAQELKNFG----QVILSAAPQCPIPDAHLDAAIKTGLFDSVWVQFYN 205          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHIE_BETVU (Acidic endochitinase SE2 OS=Beta vulgaris GN=SE2 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.925e-58
Identity = 115/211 (54.50%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   18 MARNSPAIATFVSLLVTLSLIKASQGAGGIAIYWGQNGDEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            MA    ++   +SLL+  S  ++S G+  I IYWGQNGDEG+L  TC +G Y  V +AF+  FGNGQTP +NLAGHC+PA   C  +S  IK+CQ  GIKV+                DA   ADYLWN +LGG SS+RPLG AVLDGIDFDIE G    WDDLAR L+ +++  K VYL+AAPQCP PD  L  A+ TGLFDYVWVQFYN
Sbjct:    1 MAAKIVSVLFLISLLIFASF-ESSHGSQ-IVIYWGQNGDEGSLADTCNSGNYGTVILAFVATFGNGQTPALNLAGHCDPATN-CNSLSSDIKTCQQAGIKVLLSIGGGAGGYSLSSTDDANTFADYLWNTYLGGQSSTRPLGDAVLDGIDFDIESGDGRFWDDLARALAGHNNGQKTVYLSAAPQCPLPDASLSTAIATGLFDYVWVQFYN 208          
BLAST of FC931941 vs. ExPASy Swiss-Prot
Match: CHI1_RHINI (Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 81/211 (38.39%), Postives = 112/211 (53.08%), Query Frame = 3
Query:   51 VSLLVTLSLIKASQGAGGIAIYWGQNG-----DEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHC------NPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            ++  +T +L   S     +  YWGQN       +G+L S C +G+   + ++FLNKF  G  PEINLA  C      N     C  V   IK+CQS G+KV+                + +  A+ +WN F GGTS +RP   AV+DGID DIE GS+  +   A F++A  S+G    + AAPQCPFPD  LG+ ++    D+V VQFYN
Sbjct:   11 IAAFITSTLAAYSSNGVNVMYYWGQNSAGGSNTQGSLVSYCQSGQVDVIILSFLNKFNMGGLPEINLASACEQTFFPNTNLLHCPTVGSDIKTCQSNGVKVLLSLGGAAGSYGFSSDSEGQTFAETIWNLFGGGTSDTRPFDDAVIDGIDLDIEGGSSTGY---AAFVTALRSKG-HFLIGAAPQCPFPDAILGSVIDAVGLDFVNVQFYN 217          
The following BLAST results are available for this feature:
BLAST of FC931941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHLY_HEVBR2.850e-8673.24Hevamine-A OS=Hevea brasiliensis PE=1 SV=2[more]
CHIT3_VITVI1.160e-7970.09Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE... [more]
CHIA_ARATH3.156e-7567.51Acidic endochitinase OS=Arabidopsis thaliana GN=CH... [more]
CHIA_TOBAC4.071e-6660.40Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=... [more]
CHIA_PHAAN7.552e-6358.88Acidic endochitinase OS=Phaseolus angularis PE=2 S... [more]
CHIA_CICAR4.895e-6257.36Acidic endochitinase OS=Cicer arietinum PE=2 SV=1[more]
CHIB_TOBAC3.173e-6158.59Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1[more]
CHIA_CUCSA3.173e-6156.86Acidic endochitinase OS=Cucumis sativus PE=1 SV=1[more]
CHIE_BETVU1.925e-5854.50Acidic endochitinase SE2 OS=Beta vulgaris GN=SE2 P... [more]
CHI1_RHINI2.369e-3238.39Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34202G12EF PostHarveN Citrus clementina cDNA clone C34202G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931941 ID=FC931941; Name=FC931941; organism=Citrus clementina; type=EST; length=719bp
GTTGCATAATTGCAGAAATGGCCAGAAACTCTCCAGCAATAGCAACATTC
GTCTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCCGG
CGGCATCGCAATCTATTGGGGCCAAAACGGCGACGAGGGTACCCTCACTT
CAACCTGTGCCACAGGCAAATATGCTTATGTCAACATAGCTTTCCTGAAC
AAGTTTGGCAACGGCCAGACCCCTGAAATTAACCTTGCCGGCCACTGCAA
CCCTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTGTC
AGAGCCGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTAGC
TACTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTGTG
GAACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGCTG
TGTTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATTGG
GATGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAAGT
TTACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGGTG
CTGCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACAAC
ACCCACCTTGTCCGTATAGTTCAGGAATACCCAGAAATCTATAAGNTCAT
TTACAGATGGGCTCATCAT
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