FC931943

Overview
NameFC931943
Unique NameFC931943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig641 contig Ccv1_Contig641:54..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 3.642e-88
Identity = 151/178 (84.83%), Postives = 169/178 (94.94%), Query Frame = 3
Query:  150 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKVLEKCMRVLLY 683
            QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVK+LEKCMRVLLY
Sbjct:   22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLY 199          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45
Identity = 86/182 (47.25%), Postives = 133/182 (73.08%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKVLEKCMRVLLY 683
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +++E+CMRVL Y
Sbjct:   42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYY 223          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.980e-45
Identity = 82/182 (45.05%), Postives = 135/182 (74.18%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKVLEKCMRVLLY 683
            P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+ +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  NG+ +LG V  +GV +E   +ATGFG +LA+P+LR+  E    LS E+  +++++CM+VL Y
Sbjct:   20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYY 201          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44
Identity = 84/182 (46.15%), Postives = 132/182 (72.53%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKVLEKCMRVLLY 683
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   ++E+CMRVL Y
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 223          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.471e-44
Identity = 84/182 (46.15%), Postives = 132/182 (72.53%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKVLEKCMRVLLY 683
            PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +++E+CMRVL Y
Sbjct:   42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYY 223          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.228e-44
Identity = 85/185 (45.95%), Postives = 132/185 (71.35%), Query Frame = 3
Query:  135 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKVLEKCMRVLLY 683
            P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+GG   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +++E+CMRVL Y
Sbjct:   38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYY 222          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.356e-42
Identity = 80/180 (44.44%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  150 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDGVKVLEKCMRVLLY 683
            Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE SDFQ +   L++L+  D+  DDG+ L  +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G+ +LG V ++G  ++D  + TG+G+H+A P+LR    E  N++ E   ++++ C+RVL Y
Sbjct:   35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFY 214          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 82/187 (43.85%), Postives = 122/187 (65.24%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR-----DEWHENLSYEDGVKVLEKCMRVLLY 683
            PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+ISD+Q++ R L++L + +  + DG +L P  +H YL++V+Y RRNK DP WN L++ GV  +N + Y+    + G  +    +ATGF  HLA P+LR     D W + LS E     +++CMRVL Y
Sbjct:   32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDECMRVLFY 217          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 73/160 (45.62%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI---LYDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR 608
            P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++ GV+ NG ++L  V+++GV +    +ATGFG H+A P+LR
Sbjct:   30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLR 189          
BLAST of FC931943 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 72/173 (41.62%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  174 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYE--DGVKVLEKCMRVLLY 683
            TGTSV+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ ++ D   DD   + PK L S++TRV+YNRR++ +PL+  +V+GGV N G  YL  V + G ++ED  VATGF  HLA P++R++  ++  +   +  +++  CM VL Y
Sbjct:   56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYY 228          
The following BLAST results are available for this feature:
BLAST of FC931943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSB4_ARATH3.642e-8884.83Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_BOVIN2.235e-4547.25Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_XENLA4.980e-4545.05Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
PSB4_HUMAN1.892e-4446.15Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_MOUSE2.471e-4446.15Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_RAT3.228e-4445.95Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_DICDI1.356e-4244.44Proteasome subunit beta type-4 OS=Dictyostelium di... [more]
PSB4_SCHPO8.227e-4043.85Probable proteasome subunit beta type-4 OS=Schizos... [more]
PSB4_YEAST1.606e-3545.63Proteasome component PRE4 OS=Saccharomyces cerevis... [more]
PSB4_DROME2.318e-3441.62Proteasome subunit beta type-4 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC34202H02EF PostHarveN Citrus clementina cDNA clone C34202H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931943 ID=FC931943; Name=FC931943; organism=Citrus clementina; type=EST; length=683bp
ACACAAGGCTTCTCAGTTCTCAGAAGTTAGATCGTGAAGCCTCAGCTGAT
CAGCTTTGCTATTTACTGAGAAAGTGAATCAAATCTCAAAACGAATTAAT
GGAATCGATCCAAGCCAAACAAGGACTTGTCGGCCCTAACGACCCCATTC
AAAGAACCCAGTTACCATATGTGACTGGTACATCTGTTGTTGCGCTGAAG
TACAAAGATGGCATATTAATGGCTGCTGACATGGGAGGTTCCTATGGGTC
AACAATCCGATACAAGAGTGTGGAACGGATTAAACCTATTGGAAAGCATT
CTCTACTGGGTGCCAGTGGAGAAATAAGTGATTTTCAGGAGCTTTTGCGT
AATCTTGATGAGCTTATACTTTATGACAATATGTGGGATGATGGGAACTC
TTTGGGGCCAAAAGAGTTGCACAGCTATTTGACCAGGGTCATGTATAACA
GGCGTAACAAGTTTGATCCATTGTGGAACTCTCTTGTGCTTGGTGGAGTG
AAAAATGGACAGAAATATCTTGGCATGGTATCAATGATAGGAGTGAACTT
TGAGGACAGCCACGTTGCAACTGGGTTTGGGAATCATCTTGCAAGGCCAA
TTCTTCGTGATGAATGGCATGAAAACTTGAGTTATGAAGATGGCGTTAAA
GTGCTGGAAAAGTGCATGCGTGTGCTCCTGTAT
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