FC931950

Overview
NameFC931950
Unique NameFC931950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIP1_YEAST (Protein transport protein YIP1 OS=Saccharomyces cerevisiae GN=YIP1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.883e-22
Identity = 61/154 (39.61%), Postives = 85/154 (55.19%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G FLL++GK  +GYIYGVA+FGT +LH +  LMS   DT    N                           L F  +AS+LGYCFLPL   SL+GI   ++   GY++++  V W T++SSG   ++ ++   R L+AYPL +FY VF +M IF
Sbjct:  122 GLFLLMAGKVHFGYIYGVALFGTISLHNLSKLMSNN-DTSTQTN---------------------------LQFFNTASILGYCFLPLCFLSLLGIFHGLNNTTGYVVSVLFVIWSTWTSSGFLNSLLQLQNARLLIAYPLLIFYSVFALMVIF 247          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIP1_SCHPO (Protein transport protein yip1 OS=Schizosaccharomyces pombe GN=yip1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 1
Query:    4 TFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIFS 465
            TFL L G++ +GYIYG+A+ G+ +LH +L LMS                                  +  L F R+ SVLGY  LPLV+ +    +F  + + GY L   A  WCTY++S MF  + +++ MR LVAYP+ LFY VF ++ +FS
Sbjct:  107 TFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMS----------------------------------AKNLFFTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITVFS 226          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_DANRE (Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 53/154 (34.42%), Postives = 80/154 (51.95%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   ++ +L+LMS                        M+G S          F   ASVLGYC LP+++ S  G++F +  + G +LT A +GWC+ S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  138 GATLLLTGKIQFGYVYGISAIGCLGMYCLLNLMS------------------------MTGVS----------FGCVASVLGYCLLPMIILSSFGVIFSLQGIMGIILTAAIIGWCSLSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF 257          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_RAT (Protein YIPF5 OS=Rattus norvegicus GN=Yipf5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   +  +L+LMS                        M+G S          F   ASVLGYC LP++L S   ++F +  M G LLT   +GWC++S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  138 GATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS------------------------MTGVS----------FGCVASVLGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGWCSFSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF 257          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_MOUSE (Protein YIPF5 OS=Mus musculus GN=Yipf5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   +  +L+LMS                        M+G S          F   ASVLGYC LP++L S   ++F +  M G LLT   +GWC++S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  138 GATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS------------------------MTGVS----------FGCVASVLGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGWCSFSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF 257          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_PONAB (Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   +  +L+LMS                        M+G S          F   ASVLGYC LP++L S   ++F +  M G +LT   +GWC++S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  138 GATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS------------------------MTGVS----------FGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_MACFA (Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   +  +L+LMS                        M+G S          F   ASVLGYC LP++L S   ++F +  M G +LT   +GWC++S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  138 GATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS------------------------MTGVS----------FGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_HUMAN (Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   +  +L+LMS                        M+G S          F   ASVLGYC LP++L S   ++F +  M G +LT   +GWC++S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  138 GATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS------------------------MTGVS----------FGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_BOVIN (Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   +  +L+LMS                        M+G S          F   ASVLGYC LP++L S   ++F +  M G +LT   +GWC++S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  138 GATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMS------------------------MTGVS----------FGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257          
BLAST of FC931950 vs. ExPASy Swiss-Prot
Match: YIPF5_XENTR (Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 49/154 (31.82%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 GTFLLLSGKALYGYIYGVAVFGTFALHLILSLMSPALDTVPTPNAVDPTNYNPHHKPSMSGASAAGHFSATLTFPRSASVLGYCFLPLVLTSLIGIMFPMDTMFGYLLTIAAVGWCTYSSSGMFCTVARMSGMRGLVAYPLTLFYVVFGIMGIF 462
            G  LLL+GK  +GY+YG++  G   ++ +L+LMS                        M+G S          F   +SVLGYC LP+++ S   ++F +  + G +L    +GWC++S+S +F +   M G + LVAYP  L Y VF ++ +F
Sbjct:  137 GATLLLAGKIQFGYVYGISAIGCLGMYCLLNLMS------------------------MTGVS----------FGCVSSVLGYCLLPMIILSSFAVIFSLQGILGIVLAALIIGWCSFSASKIFISALAMDGQQVLVAYPCALLYGVFALISVF 256          
The following BLAST results are available for this feature:
BLAST of FC931950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YIP1_YEAST1.883e-2239.61Protein transport protein YIP1 OS=Saccharomyces ce... [more]
YIP1_SCHPO4.638e-2136.36Protein transport protein yip1 OS=Schizosaccharomy... [more]
YIPF5_DANRE3.926e-2034.42Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2 SV=1[more]
YIPF5_RAT6.697e-2035.06Protein YIPF5 OS=Rattus norvegicus GN=Yipf5 PE=2 S... [more]
YIPF5_MOUSE6.697e-2035.06Protein YIPF5 OS=Mus musculus GN=Yipf5 PE=2 SV=1[more]
YIPF5_PONAB1.142e-1934.42Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1[more]
YIPF5_MACFA1.142e-1934.42Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2... [more]
YIPF5_HUMAN1.142e-1934.42Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1[more]
YIPF5_BOVIN1.142e-1934.42Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1[more]
YIPF5_XENTR2.154e-1831.82Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34202H09EF PostHarveN Citrus clementina cDNA clone C34202H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931950 ID=FC931950; Name=FC931950; organism=Citrus clementina; type=EST; length=653bp
GGCACTTTCCTCCTGCTCTCAGGCAAGGCGCTCTACGGCTATATCTACGG
TGTCGCTGTTTTCGGTACCTTCGCTTTGCATCTGATCCTCAGCCTCATGT
CTCCCGCTCTCGACACTGTCCCAACTCCCAACGCCGTCGACCCTACCAAC
TACAACCCCCACCACAAACCTTCCATGTCCGGTGCCTCGGCTGCGGGCCA
TTTCTCTGCTACTCTGACCTTTCCGCGCTCCGCTAGCGTTTTGGGCTACT
GCTTCCTTCCTTTGGTGCTTACCAGTCTCATTGGTATCATGTTTCCCATG
GACACTATGTTCGGCTATCTCCTAACAATTGCCGCTGTTGGCTGGTGCAC
ATACAGTTCGTCGGGGATGTTCTGCACTGTGGCGCGTATGAGTGGCATGA
GGGGTCTCGTGGCGTATCCGTTGACTTTGTTCTACGTCGTTTTTGGAATT
ATGGGTATATTCTCTTCGCGTGGCACCGGGTCGCTGGCTGCGAAGACGGG
TGCGGCTTGAAAAAGTTACGCTTTGGTTGATACACGTTCTTTGTCTATGC
ATTGCATAGATAGTCCTTGAGGCCAGTTGCTCCGATGTCTACGGTCTTCA
TTTTAGGCCAGCCTTTGCATCTTAAGCATGAATGTAATGAAATTCCAGCT
GTG
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