FC931957

Overview
NameFC931957
Unique NameFC931957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931957_ssr539 microsatellite FC931957_ssr539:539..550. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10342 contig Ccv1_Contig10342:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931957 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:  113 MATEDPVVDTETLPQP------ESAEPAVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 379
            MATE+P+V  ET+P+P         EP V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of FC931957 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:  113 MATEDPVVDTETLPQPESAEPAVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 379
            MATE+PV+  E + + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEE-QAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of FC931957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA3.646e-1349.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC8.980e-1246.07Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34203A04EF PostHarveN Citrus clementina cDNA clone C34203A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931957 ID=FC931957; Name=FC931957; organism=Citrus clementina; type=EST; length=666bp
GGCACAAACGAAATTACTAGTCCTCCACCACCCGCATTTTTAGATCCAAT
CTTTCGTTATCTTTCTTGCTCGCTCTCCACTTCCTAATTTCTGAAACCCA
ATTCGATTCAAAATGGCCACTGAAGATCCCGTTGTGGACACGGAGACCCT
TCCTCAACCGGAATCCGCTGAACCGGCGGTAGAGGACAAACCGTCCTCCA
AAGCCGGCAAAGGCAAGACCTCTAAGGAGCCCAAAGCCAAGAAAGCCGCT
GCTCCGAGGAAGCCTAGAAGCCCTCCCTCTCATCCTCCGTATGAAGAGAT
GATTAAGGATGCAATTGTTACTTTGAAAGAGAAGACCGGTTCGAGTCAGT
ATGCAATTGCCAAATTTATTGAGGAGAAGTACAAGCAGTTGCCACCCAAC
TTTAAGAAGCTGTTGCTGTTTCATTTGAAGAAGCTTGTGGGTTCCGGAAA
GCTCGTGAAGGTTAAGGGTTCCTTCAAGCTTCCATCGGCTAGGGCTGCCG
TTTCTAAGCCGGCTGCATCTGTTCCTGCTTCTCCGGCTAAGAAGAAGAAG
CCGGTTGCTGCTGGTAAGGCCAAAACTAAGGCGGCGCCCTCCAAGGCCAA
AGCTCCACCTAAGGCTAAGGCTAAGGCACCAGCTAAAGCTCCGGCCAGGG
CTAAGCCAGCTGCTAA
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