FC931958

Overview
NameFC931958
Unique NameFC931958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931958_ssr35 microsatellite FC931958_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of FC931958 vs. ExPASy Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.175e-19
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 1 
Query:  193 DSAAAMKMDLSSPFGSNSEKLAIPPS----PVKQAATVNAFR-GLGSKEETFFDSQPWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFAGAPQVNSTSLPDKTPG-SISEPSPTGKKPKLAELFRQISKEGSEDQHVDEQNTQGSQNMANGKTEIRTTILDVLPISNGTPYVSGVNS 702
            D+ + +   +   F S  +  +IP +    PVK   + ++ +   GSK+ETFFDSQPWL SD +DDF+SVNGDFTPS GNTP        P+ ++    +K P    S P+P  ++ KL ELFR   +E        E+   GS +  +                  TPY+SG NS
Sbjct:   34 DNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIRE--------EREESGSSSAIS------------------TPYLSGANS 183
The following BLAST results are available for this feature:
BLAST of FC931958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3721_ARATH4.175e-1935.23Uncharacterized protein At3g27210 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34203A05EF PostHarveN Citrus clementina cDNA clone C34203A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931958 ID=FC931958; Name=FC931958; organism=Citrus clementina; type=EST; length=741bp
GATACTGGGTCTTGTTTTGTATAATTCACTTTCGCTCTCTCTCTCTCTCT
CTTCTGGTGTCTCTACAGAAGAAGATTTTCTGATGCTAAGAGCGTCGCTG
GCTTCTTAGTTTTATTATACCTTTTGTCAATTTAAATAAAGAGAATTTAG
AGACATGGGTTCGTGCGTATCATCAGCACACAGAGAACAGCAGACTCAGC
CGCTGCCATGAAAATGGACTTATCATCACCATTTGGGTCCAATAGTGAGA
AGCTTGCGATTCCACCTTCCCCCGTGAAACAAGCGGCGACAGTCAACGCG
TTTAGAGGCCTTGGTAGTAAAGAGGAAACCTTTTTCGATTCTCAACCATG
GCTAGATTCTGACTGCGAAGATGATTTTTACAGTGTCAATGGAGATTTTA
CCCCATCTCGTGGCAATACTCCAGTCCATCACAACTTTGCAGGGGCTCCT
CAAGTCAACAGCACTTCTCTTCCGGACAAAACTCCCGGTTCCATTTCTGA
ACCATCCCCAACAGGAAAGAAACCGAAACTAGCTGAACTGTTCCGGCAAA
TTTCTAAAGAAGGTTCAGAAGACCAACATGTTGATGAACAAAACACCCAA
GGTAGCCAAAACATGGCCAATGGGAAGACAGAAATTAGGACAACTATACT
TGATGTACTTCCCATCAGCAATGGTACCCCATATGTTTCTGGAGTTAACT
CTGTGTGTAGTAGTGAAAGGACTCCCTATGGAGATTCTATG
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