FC931965

Overview
NameFC931965
Unique NameFC931965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931965_ssr448 microsatellite FC931965_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931965_ssr51 microsatellite FC931965_ssr51:51..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14206 contig Ccv1_Contig14206:27..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931965 vs. ExPASy Swiss-Prot
Match: SNP33_ARATH (SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.280e-40
Identity = 88/144 (61.11%), Postives = 108/144 (75.00%), Query Frame = 2 
Query:  257 MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSS-YSLTSAARNKYRNDFRDSGGLENQSVQELEGYAVYKAEDTTKQVHGCLKIAEEIREDATXALGSLH 685
            MFGL+KSP  + +HNSVD     SS+ NPFDSDDE DNK TL PSKRT+SEP+L      TNPF  + +++  + SS  SL S ++ +Y+N+FRDSGG+ENQSVQELEGYAVYKAE+TTK V GCLK+AE+IR DAT  L  LH
Sbjct:    1 MFGLRKSPANLPKHNSVD---LKSSKPNPFDSDDESDNKHTLNPSKRTTSEPSLADM---TNPFGGERVQKGDSSSSKQSLFSNSKYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLH 138
[Close]
BLAST of FC931965 vs. ExPASy Swiss-Prot
Match: SNP30_ARATH (Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 52/120 (43.33%), Postives = 66/120 (55.00%), Query Frame = 2 
Query:  326 SSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEGYAVYKAEDTTKQVHGCLKIAEEIREDATXALGSLH 685
            S  +N   ++   +   T+   +RTSSEP L T       FDDDD                  KY+N F DSGGL++Q+ +ELE YAVYKAE+TTK V+ CLKIAE+IR D    L  LH
Sbjct:    7 SPGNNKLPNESSNNKGGTITAGRRTSSEPILITPD-----FDDDD------------------KYKNGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLH 103
[Close]
BLAST of FC931965 vs. ExPASy Swiss-Prot
Match: SNP29_ARATH (SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 47/120 (39.17%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:  326 SSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEGYAVYKAEDTTKQVHGCLKIAEEIREDATXALGSLH 685
            +S  NPFD + E                        S NPFDDDD  +               ++ +  + SGG ENQ+VQELE YAVY +E+TTK V GCLK+AEEIR DA+  L  L+
Sbjct:    5 NSSWNPFDDEKE-------------------AAKSFSLNPFDDDDDDKEV-----------EKRFTSSLKPSGGKENQTVQELESYAVYNSEETTKTVQGCLKVAEEIRCDASKTLVMLN 94
The following BLAST results are available for this feature:
BLAST of FC931965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SNP33_ARATH1.280e-4061.11SNAP25 homologous protein SNAP33 OS=Arabidopsis th... [more]
SNP30_ARATH3.393e-1743.33Putative SNAP25 homologous protein SNAP30 OS=Arabi... [more]
SNP29_ARATH4.586e-1439.17SNAP25 homologous protein SNAP29 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC34203A12EF PostHarveN Citrus clementina cDNA clone C34203A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931965 ID=FC931965; Name=FC931965; organism=Citrus clementina; type=EST; length=685bp
GATCCTTGTTCCAATTTCAGAGAACTCGCTCCACGCGATTTATATCCGTG
GCTCGCTCGCTCGCTCTTTCTCGTTTAGAGTTTTAAACCCACCAAATCTT
TCTTCACAACGTAAAGCTCTTTCTTCGCAAAGTTTCATTTTGACTAATTC
CTTGTGAGATTCTTGCGCTCTTGCAAGATTTTCTGCAACATTTTCTCAGG
AACATTGATTGATAGATCGATTTCTCTTCAGTTTGAATAATAGCTCTGCT
TTAAGAATGTTTGGCTTAAAGAAATCTCCTTTAAGGGTTGGTAGGCATAA
TTCTGTTGACCCCGGACACCAGGTTTCTTCTCGGTCCAACCCGTTTGATT
CTGACGATGAGTTGGATAATAAGCAGACTCTTAAACCCTCAAAAAGGACT
TCTTCTGAACCCAACCTAACTACATCAAAAGTTAGTACTAATCCTTTTGA
TGATGATGATATAAAAGAGAACACTGCAGTGTCCTCATATTCCCTTACTT
CAGCTGCGAGAAACAAATATAGGAATGATTTTCGTGACTCTGGTGGATTA
GAGAACCAGTCTGTGCAAGAATTGGAGGGTTATGCTGTTTACAAGGCAGA
GGACACTACAAAGCAAGTGCATGGCTGCCTGAAGATTGCTGAAGAGATTA
GAGAGGATGCTACTAANGCTTTGGGTAGCTTGCAC
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