FC931966

Overview
NameFC931966
Unique NameFC931966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931966_ssr538 microsatellite FC931966_ssr538:538..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15422 contig Ccv1_Contig15422:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 106/195 (54.36%), Postives = 130/195 (66.67%), Query Frame = 1
Query:    4 NKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEI--YRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRV-FQKGSGGKKTHISGLAGLGSFGNEXXXXXXXXXMDSSPDNGSKTIKSVADSAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 579
            NK+EPWELP KAKMGEKEWYFF +RDRKYPTGLRTNRAT +GYWKATGKD+EI   + KSL+GMKKTLVFY+GRAPKGEKS WVMHEYRLDGKFS H +  +AK+EWVLC+V  + G   ++T++   +   +   E           SS  +    I +   + +VSCFSN+        T  +   F   PPP
Sbjct:   58 NKSEPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGVVSRETNLISSSSSSAVTGEF----------SSAGSAIAPIINTFATEHVSCFSNN----SAAHTDASFHTFLPAPPP 238          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.412e-50
Identity = 119/275 (43.27%), Postives = 147/275 (53.45%), Query Frame = 1
Query:    4 NKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGK--SLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQK-----------GSGGKKTHISGLAGLGSFGNEXXXXXXXXXMDSSPDNGSK-----------------------------TIKSVADSAYVSCFSNSIDLQRNQKTTTT-----IENFFNNPPPISVSSNCPDVFPRIPLSSNSFYSPLSVPVPSHAQFP 687
            NK EPW+LP +AKMGEKEWYFF +RDRKYPTGLRTNRAT +GYWKATGKD+EI+  K  +LVGMKKTLVFY+GRAPKGEKS+WVMHEYRL+GKFS H + +++K+EWV+ RVFQK           G GG    +S  +G G                  P + S                              T+ + A + +VSCFS          TTTT     + +F   PPP+       D FPR    + S  S       +  QFP
Sbjct:   55 NKCEPWQLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLASTGAVSEGGGGGGATVSVSSGTGPSKKTKVPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYTDSSCSYDSRSTNTTVTASAITEHVSCFS-------TVPTTTTALGLDVNSFSRLPPPLGFDF---DPFPRFVSRNVSTQSNFRSFQENFNQFP 319          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 82/121 (67.77%), Postives = 96/121 (79.34%), Query Frame = 1
Query:    4 NKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYR--GKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQKGSGGKK 360
            N+ EPWELP  AKMGE+EWYF+ +RDRKYPTGLRTNRAT +GYWKATGKDKE++   G  LVGMKKTLVFY+GRAP+G K+ WVMHEYRL+     HS   T K EWV+CRVF K +G +K
Sbjct:   60 NRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLEND---HSHRHTCKEEWVICRVFNK-TGDRK 176          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC77_ORYSJ (NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.477e-39
Identity = 101/253 (39.92%), Postives = 128/253 (50.59%), Query Frame = 1
Query:    4 NKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYR----------------GKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVH--SLPKTAKNEWVLCRVFQKGSG----GKKTHISGLAGLGSFGNEXXXXXXXXXMDSSPDNGSK--TIKSVADSA--YVSCFSNSIDLQRNQKT---TTTIENFFNNPPPISVSSNCPDVFPRIPLSSNSFYSPLSVPVPSH 675
            NK EPW+LP KAKMGEKEWYFF  +D KYPTG+RTNRAT  GYWKATGKD+EI+R                 K LVGMKKTLVFY GRAPKG K++WVMHE+RL      H  +L    K+EWV+C+VF K  G      +      A +  +  E              D G     +  + D +  +VS  SN +    N      + +      N   +S     P+ +  I  SS+S  S  S P+  H
Sbjct:   57 NKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHKKQGDEAINNQQQQPQYAAVDQYSAETPNSGSSVVQAGDIDGGDDFFQLDDIIDPSIYFVSNSSNILSAPPNNNNAVYSVSASTTTTNTTAVSFQQQ-PNYYSLINKSSSSSSSNYSAPLQQH 308          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC22_ARATH (NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.298e-39
Identity = 89/193 (46.11%), Postives = 116/193 (60.10%), Query Frame = 1
Query:    4 NKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSV--HSLPKTAKNEWVLCRVFQKGSGGKKTHISGLAGLGSFGNEXXXXXXXXXMDSSPDNGSKTIKSVAD------SAYVSCFSNSIDLQRNQKTTTTIEN 558
            NK EPW++P  A +G K+WYF+  RDRKY TGLRTNRAT +GYWKATGKD+ I R   LVGM+KTLVFY+GRAP+G K+ WVMHE+RL G      HSL  + K +WVLCRVF K + G    +     +GS  +E         MD   +   +    ++D      + +V CFSN   L +NQ   + + N
Sbjct:   58 NKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRLQGSHHPPNHSL-SSPKEDWVLCRVFHKNTEG----VICRDNMGSCFDETASASLPPLMDPYINFDQEPSSYLSDDHHYIINEHVPCFSN---LSQNQTLNSNLTN 242          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC29_ARATH (NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.095e-34
Identity = 68/119 (57.14%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    7 KNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRL--DGKFSVHSLPKTAKNEWVLCRVFQKGSGGK 357
            K +PW+LP K + GE EWYFF  R+RKYP G+R NRA VSGYWKATG DK I+ G S VG+KK LVFY+GR PKG K+ W+MHEYRL    K S         +EWVLCR+++K    K
Sbjct:   48 KFDPWQLPEKTEFGENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGASK 166          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    7 KNEPWELPWKAKMGEK--EWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRL-DGKFSVHSLPKTAKNEWVLCRVFQKGSGGKK 360
            K+EPW+LP K+K+  +  EWYFF M D+KY  G +TNRAT  GYWK TGKD+EI  G  +VGMKKTLV+++GRAP+GE+++WVMHEYRL D       +P+ A   +VLCR+FQK   G K
Sbjct:   48 KSEPWDLPDKSKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRLSDEDLKKAGVPQEA---YVLCRIFQKSGTGPK 165          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    7 KNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQKGSGGKKTHIS 372
            K +PW+LP KA  GEKEWYFF  RDRKYP G R NR   SGYWKATG DK I      VG+KK LVFY G+APKG K++W+MHEYRL      H   K   ++WVLCR+++K SG ++  ++
Sbjct:   53 KFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRLIEHSRSHGSSKL--DDWVLCRIYKKTSGSQRQAVT 172          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.851e-33
Identity = 85/194 (43.81%), Postives = 105/194 (54.12%), Query Frame = 1
Query:    7 KNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQK-GSGGKKTHISGLAGLGSFGNEXXXXXXXXXMDSSPDNGSKTIKSVADSAYVSCFSNSIDLQRNQKTTTTIENFFNNPPPIS 585
            K +PW LP KA  GEKEWYFF  RDRKYP G R NR   SGYWKATG DK I      VG+KK LVFY G+APKG K++W+MHEYRL      +    T  ++WVLCR+++K  S  K+ + +G+A    F N            SS  + S   + V DS     F   ID +  Q         F+NP  IS
Sbjct:   53 KFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNG--STKLDDWVLCRIYKKQSSAQKQVYDNGIANAREFSNNG---------TSSTTSSSSHFEDVLDS-----FHQEIDNRNFQ---------FSNPNRIS 221          
BLAST of FC931966 vs. ExPASy Swiss-Prot
Match: NAC7_ARATH (NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.339e-32
Identity = 66/115 (57.39%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    7 KNEPWELPWKAKMGEKE---WYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQK 342
            K EPW+L    K+G +E   WYFF  +D+KYPTG RTNRAT +G+WKATG+DK IY   SL+GM+KTLVFY+GRAP G+KS W+MHEYRL+     +  P+  +  WV+CRVF+K
Sbjct:   46 KIEPWDLQELCKIGHEEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE--TDENGTPQ--EEGWVVCRVFKK 156          
The following BLAST results are available for this feature:
BLAST of FC931966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC54_ARATH2.870e-5154.36Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thal... [more]
NAC98_ARATH5.412e-5043.27Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thal... [more]
NAC31_ARATH1.864e-4267.77Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thal... [more]
NAC77_ORYSJ1.477e-3939.92NAC domain-containing protein 77 OS=Oryza sativa s... [more]
NAC22_ARATH4.298e-3946.11NAC domain-containing protein 21/22 OS=Arabidopsis... [more]
NAC29_ARATH1.095e-3457.14NAC domain-containing protein 29 OS=Arabidopsis th... [more]
NAC78_ARATH2.066e-3356.20NAC domain-containing protein 78 OS=Arabidopsis th... [more]
NAC72_ARATH2.066e-3354.92NAC domain-containing protein 72 OS=Arabidopsis th... [more]
NAC19_ARATH7.851e-3343.81NAC domain-containing protein 19 OS=Arabidopsis th... [more]
NAC7_ARATH1.339e-3257.39NAC domain-containing protein 7 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC34203B01EF PostHarveN Citrus clementina cDNA clone C34203B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931966 ID=FC931966; Name=FC931966; organism=Citrus clementina; type=EST; length=699bp
CCGAACAAAAATGAACCTTGGGAATTGCCTTGGAAAGCAAAGATGGGAGA
GAAAGAATGGTACTTTTTCTGCATGAGGGATAGGAAATATCCAACTGGTT
TGAGGACTAACAGGGCGACTGTATCTGGTTATTGGAAAGCCACGGGGAAA
GACAAGGAGATTTACAGAGGAAAATCTCTAGTTGGAATGAAAAAGACTCT
TGTTTTTTACAGGGGAAGAGCCCCAAAAGGGGAGAAATCAAGCTGGGTCA
TGCACGAATACAGATTGGACGGCAAATTCTCTGTTCATAGTCTCCCCAAA
ACTGCCAAAAATGAGTGGGTGCTTTGCCGGGTGTTTCAGAAGGGTTCTGG
TGGGAAAAAGACTCATATTTCAGGGCTAGCGGGATTAGGGTCTTTTGGAA
ATGAATTGGGTCCTCCTGGCTTGCCACCATTAATGGATTCATCTCCTGAT
AATGGCAGCAAGACCATCAAATCTGTTGCCGATTCGGCTTACGTGTCCTG
CTTCTCCAATTCTATTGATCTTCAAAGAAATCAAAAAACCACCACCACCA
TTGAAAATTTTTTCAACAATCCTCCTCCCATCTCTGTGTCTTCAAACTGT
CCTGATGTTTTTCCAAGAATCCCACTCTCTTCAAACTCATTCTATTCTCC
TTTATCGGTCCCGGTTCCATCACACGCGCAATTCCCAGGCTCTGTTTTC
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