FC931976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2) HSP 1 Score: 301.982 bits (772), Expect = 6.549e-91 Identity = 144/181 (79.56%), Postives = 156/181 (86.19%), Query Frame = 2 Query: 92 DFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSDS 634 DFQNFVN+VND W QPQFK DLEFD PLRELGFHGVP+KASAFI+PTS+CLVELIETPF+V+TLSEIEIVNLERVG G KNFDM IVFKDFK+DVLRIDSIPS+SLD IKEWLDTTDLKYYESRLNLNWRPILKTI DDP+KFI+DGGWEFLNMEA GYEPSD + +S Sbjct: 786 DFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSETEETEESDQGYEPSDAEPES 966 HSP 2 Score: 53.9138 bits (128), Expect = 6.549e-91 Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 Query: 1 TLGGGKRSAYDPDEVEEEQRERARKNKINM 90 TLGG +RSA DPDE+EEEQRER RKN+INM Sbjct: 756 TLGGNRRSALDPDEIEEEQRERDRKNRINM 785
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 1.219e-89 Identity = 142/181 (78.45%), Postives = 155/181 (85.64%), Query Frame = 2 Query: 92 DFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSDS 634 DFQNFVN+VND W QPQFK DLEFD PLRELGFHGVP+KASAFI+PTS+CLVELIETPF+V++LSEIEIVNLERVG G KNFDM IVFKDFK+DVLRIDSIPS+SLD IKEWLDTTDLKYYESRLNLNWRPILKTI DDP+KFI+DGGWEFLNMEA GY PSD + +S Sbjct: 786 DFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSETEDTEESDQGYVPSDAEPES 966 HSP 2 Score: 53.9138 bits (128), Expect = 1.219e-89 Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 Query: 1 TLGGGKRSAYDPDEVEEEQRERARKNKINM 90 TLGG +RSA DPDE+EEEQRER RKN+INM Sbjct: 756 TLGGSRRSALDPDEIEEEQRERDRKNRINM 785
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 1.739e-88 Identity = 134/185 (72.43%), Postives = 155/185 (83.78%), Query Frame = 2 Query: 80 KSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSDS 634 K DF +F NRVND+W PQF + DLEFDQPLRELGFHGVPHK SAFI+PTSSCLVELIE PF+V++LSEIEIVNLERVG GQKNFDM I+FKDFK+DVLR+DS+P+SSL+GIKEWLDTTD+KYYES+LNLNWR ILKTITDDP+ FI+DGGWEFLN++ GYEPSDV+ +S Sbjct: 796 KINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLDGSDSESGGSEESDKGYEPSDVEVES 980 HSP 2 Score: 57.7658 bits (138), Expect = 1.739e-88 Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1 Query: 1 TLGGGKRSAYDPDEVEEEQRERARKNKINM 90 +LGGG+RSAYDPDE++EEQRER RKNKINM Sbjct: 770 SLGGGRRSAYDPDEIDEEQRERDRKNKINM 799
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNE (FACT complex subunit SPT16 OS=Cryptococcus neoformans GN=SPT16 PE=3 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 1.155e-40 Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 2 Query: 95 FQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550 F +F R+ Q + F+LE D P RELGF+GVPHK+ ++PT++CL+ + E PF VITLSE+EIV+LERV G KNFDM V +D K+ + I+SIP + LD +KEWLD+ D+ E +NL+W I+KT+ +DP F +GGW FL Sbjct: 794 FHDFARRIETA---AQAQQFELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPHAFYAEGGWNFL 942 HSP 2 Score: 27.335 bits (59), Expect = 1.155e-40 Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 1 Query: 7 GGGKRSAY--DPDEVEEEQRERARKNKIN 87 GG KR A D DE+E+EQ +R R+ +++ Sbjct: 763 GGKKRRARYGDEDEIEQEQEDRKRRAELD 791
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_DICDI (FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 1.627e-39 Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = 2 Query: 80 KSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME 559 K DF+ F+ RV ++ +P LEFD P RELGF+GVP+ ++ FI P+ CL+ ++E PF V+TL ++EI ER KNFD++ VFKD+ R +RI IP + + +KEWLD+ ++K+Y+S N NW+ I+ TI D +KF +DGGW FL++E Sbjct: 792 KINNDFKTFIKRVEEIAPEP-----GLEFDVPYRELGFYGVPNVSTVFIQPSVHCLLSILEPPFFVLTLDDVEIACFERAIRSLKNFDLSFVFKDYNRPPIRISVIPRNYFETVKEWLDSFNIKFYQSERNYNWKRIMDTIKSDVKKFHDDGGWSFLDLE 946 HSP 2 Score: 28.4906 bits (62), Expect = 1.627e-39 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 37 DEVEEEQRERARKNKIN 87 DE EEE+RERA K KIN Sbjct: 778 DEEEEERRERALKEKIN 794
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_YARLI (FACT complex subunit SPT16 OS=Yarrowia lipolytica GN=SPT16 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39 Identity = 73/165 (44.24%), Postives = 110/165 (66.67%), Query Frame = 2 Query: 68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 562 R R++ +F+ F ++++ + ++ D P RELGFHGVP +++ + P++ CLV+LI+TPF VITL EIE+ +LERV G KNFD+ V+KDF R V I+SIP LD +K+WL+ ++ Y E +NLNW I+KT+ DP++F GGW FL++E+ Sbjct: 777 RRRLQLDKEFKAFSEKISEASDRK------VDVDTPFRELGFHGVPFRSNVLLQPSADCLVQLIDTPFSVITLGEIELAHLERVQFGLKNFDLVFVYKDFNRPVTHINSIPVDQLDAVKDWLNEVEIPYSEGPVNLNWGSIMKTVVADPQEFFTSGGWSFLDLES 935
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe GN=spt16 PE=1 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39 Identity = 74/161 (45.96%), Postives = 107/161 (66.46%), Query Frame = 2 Query: 68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550 R R + +F++F ++ + +E D P REL F+GVP +++ + PT+ CLV+L +TPF VITL+EIEI +LERV G KNFD+ +F+DF+R + I++IP LD +KEWLD+ D+ +YE LNLNW I+KT+ +DP F E+GGW FL Sbjct: 778 RRRAQLDREFKSFAEKIAEA------SEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWLDSCDICFYEGPLNLNWTTIMKTVNEDPIAFFEEGGWGFL 932
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_GIBZE (FACT complex subunit SPT16 OS=Gibberella zeae GN=SPT16 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39 Identity = 80/187 (42.78%), Postives = 117/187 (62.57%), Query Frame = 2 Query: 68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQS 628 R R + FQ F ++ + G+ + +E D P+RELGFHGVP +++ F+ PT+ CL++++E PF+VIT+ E+EI +LERV G KNFDM VFKDF R +++IP LD +K++LD++D+ Y E LNLNW I+KT+T D +F DGGW FL ++ G +PSD +S Sbjct: 787 RRRAELDRLFQGFAQKIAEA-GRNE----GIEVDMPIRELGFHGVPFRSNVFVQPTTDCLIQVVEPPFMVITIEEVEIAHLERVQFGLKNFDMVFVFKDFTRAPYHVNTIPVEFLDQVKDYLDSSDIAYTEGPLNLNWPTIMKTVTADTHQFFADGGWSFLQADS----------DDDGGDPSDEES 958
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38 Identity = 80/187 (42.78%), Postives = 109/187 (58.29%), Query Frame = 2 Query: 68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQS 628 R R+ +T F +F +V+ L EFD P LGF GVP +++ + PT+SCLV L E P ++TLSE+E+V+ ERV L KNFDM +FKD+K + IP SS+D IKEWL T D+ Y E +LNW ++KTITDDPE F E+GGW FL+ E+ Y+P + + Sbjct: 772 RRRLNTT--FNSFCEKVSRLTND------QFEFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDPEDFFENGGWTFLDAESEGEDAGDDSDESDAYDPEEADA 950
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38 Identity = 78/164 (47.56%), Postives = 109/164 (66.46%), Query Frame = 2 Query: 68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME 559 R ++K+ F+NF+ +V L + +LEF+ P R+LGF+G P++++ + PTSS LV E P V+TL E+E+++ ERV KNFDM IV+KD+ + V I++IP +SLD IKEWL++ DLKY E +LNW I+KTI DDPE F E GGW FL E Sbjct: 773 RHKLKTA--FKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPE 928 The following BLAST results are available for this feature:
BLAST of FC931976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931976 ID=FC931976; Name=FC931976; organism=Citrus clementina; type=EST; length=692bpback to top |