FC931983

Overview
NameFC931983
Unique NameFC931983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931983_ssr44 microsatellite FC931983_ssr44:44..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15425 contig Ccv1_Contig15425:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931983 vs. ExPASy Swiss-Prot
Match: CKX5_ARATH (Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 3 
Query:  471 ASKLLLTFAICRLIVTVGLTMDPTELLRLG---VYGQLSVDPSDVQTASLDFGML-SRAEPWAVLHPASADDI 677
            +S LLLTFAIC+LI+ VGL + P+ELLR+G   V G  +V PSD+ + S DFGML S  EP AVLHP+SA+D+
Sbjct:    7 SSFLLLTFAICKLIIAVGLNVGPSELLRIGAIDVDGHFTVHPSDLASVSSDFGMLKSPEEPLAVLHPSSAEDV 79
The following BLAST results are available for this feature:
BLAST of FC931983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CKX5_ARATH2.642e-1458.90Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC34203D01EF PostHarveN Citrus clementina cDNA clone C34203D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931983 ID=FC931983; Name=FC931983; organism=Citrus clementina; type=EST; length=680bp
GACAGAATATCAATAAATTAAAGTTAAAAATAATAACATTATCATTATTA
TTATTATTGTTATTAACTAATTTTTCGTTTCAAGTTGTTTTTCTTGGGAG
ATTACAAACACTATTTTATTATTTAGTTATTATTATAAAAAAGAGAAAAA
AATAAAAAAAAATGAAAAAGAAAGAAAAGGGCTAGCAGAGAAAGAACATG
GAATCTGTGCATGTTACGTAGAAAATCTTTAAAGCGTAATCCAGGCTTAC
GTTAGCCCCACGACTCCCCCACAACGCTGCCACAGGATTTTGTTGTTAGC
TTTTTATTTCTAACACCAACGCCACCCTTTTGCTTCTTCATTTCTTTCTT
TATATGTACCAAACGAAAACAAAAACAAAAGTAAAAACAAAAACAATTTT
TTGCGTTCTGTGTTGGTGCTGTTTGAACTACCTAGCTATTAAGCTGGCCG
AGAAGGAATTACTCAGTATGGCGAGTAAGCTTCTTCTAACTTTTGCTATT
TGTAGATTAATCGTTACCGTAGGATTGACAATGGACCCCACGGAGCTCCT
CCGCCTCGGAGTCTACGGTCAACTAAGCGTCGACCCATCCGACGTGCAAA
CAGCTTCCCTTGACTTTGGTATGTTAAGCCGGGCCGAGCCTTGGGCAGTT
TTGCACCCAGCTTCAGCGGATGATATTACT
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