FC932020

Overview
NameFC932020
Unique NameFC932020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932020 vs. ExPASy Swiss-Prot
Match: HTH_ARATH (Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27
Identity = 61/137 (44.53%), Postives = 90/137 (65.69%), Query Frame = 1
Query:  169 KPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLV 579
            +P    V F D  G +H+A L+N   +E+ILS+GAIGSPQ+LMLSG+GP  EL++  I VV++  +VG+GM+DNPMN + VPS  P+E SL+Q VGIT+   Y+E ++G   +P   + +   Y    NK ++ S +
Sbjct:  261 RPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTGFGQSP---ESIHTHYGIMSNKNELFSTI 394          
BLAST of FC932020 vs. ExPASy Swiss-Prot
Match: MDL4_PRUSE ((R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  175 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGIT 462
            TA  V + D  G  HRA ++  GK E+ILSAG +G+PQLL+LSGVGP + L    I VV   P VGQ ++DNP N + +    P+E S V V+GIT
Sbjct:  258 TAVGVVYTDSNGTSHRALVS--GKGEVILSAGTLGTPQLLLLSGVGPESYLTSLNISVVASHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGIT 351          
BLAST of FC932020 vs. ExPASy Swiss-Prot
Match: MDL3_PRUSE ((R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  175 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGIT 462
            TA  V + D  G  H+A +   G+ E+ILSAG IGSPQLL+LSGVGP + L    I VV   P VGQ + DNP N + +    P+E S V V+GIT
Sbjct:  257 TAIGVIYTDSNGTTHQAFVR--GEGEVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGIT 350          
BLAST of FC932020 vs. ExPASy Swiss-Prot
Match: MDL1_PRUSE ((R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 54/139 (38.85%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  175 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITR------FDSYIETASGLSLAPSWAQGLTRD-YSSFLNKTDIP 570
            TA  V + D  G  HRA + +  K E+I+SAG IG+PQLL+LSGVGP + L    I VV+  P VGQ + DNP N + +    P+E ++V V+GI+       F S   T    S  PS +  L    ++ F +K   P
Sbjct:  256 TATGVIYRDSNGTPHRAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFSFFPSTSYPLPNSTFAHFASKVAGP 392          
BLAST of FC932020 vs. ExPASy Swiss-Prot
Match: MDL2_PRUSE ((R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.520e-14
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  175 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGIT 462
            TA  V + D  G  H+A +   G  E+ILSAG IGSPQLL+LSGVG  + L    I VV   P VGQ + DNP N + +    P+E S V V+GIT
Sbjct:  258 TAIGVIYTDSNGTTHQAFVRGDG--EVILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGIT 351          
BLAST of FC932020 vs. ExPASy Swiss-Prot
Match: MDL1_PRUDU ((R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  187 VTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGL 498
            V + D  G  H+A +   G  E+I+SAG IG+PQLL+LSGVGP + L    I VV   P VGQ + +NP N +      P+E S+V V+GI R D Y  + S L
Sbjct:  261 VIYTDSDGNSHQAFVRGNG--EVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQFLYNNPRNFINNFPPNPIEASVVTVLGI-RSDYYQVSLSSL 361          
The following BLAST results are available for this feature:
BLAST of FC932020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HTH_ARATH2.552e-2744.53Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=... [more]
MDL4_PRUSE2.647e-1648.96(R)-mandelonitrile lyase 4 OS=Prunus serotina GN=M... [more]
MDL3_PRUSE2.241e-1548.96(R)-mandelonitrile lyase 3 OS=Prunus serotina GN=M... [more]
MDL1_PRUSE4.993e-1538.85(R)-mandelonitrile lyase 1 OS=Prunus serotina GN=M... [more]
MDL2_PRUSE5.520e-1447.92(R)-mandelonitrile lyase 2 OS=Prunus serotina GN=M... [more]
MDL1_PRUDU1.041e-1244.23(R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL... [more]
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Properties
Property NameValue
Genbank descriptionC34203G09EF PostHarveN Citrus clementina cDNA clone C34203G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932020 ID=FC932020; Name=FC932020; organism=Citrus clementina; type=EST; length=659bp
GATTGTTCTTCTTTCTAAATTCTGTAAATGGACCCTTATCTTTCTTATAA
CGCTCACTATGGTCAAGTTAAAGATTACTGTTATATAAACTTGATTTTTT
AAGAATTAGCAAATATAAGATATTATAGTGTTGTTTAAATCGTTTTGATC
CTTGTTCTAGGGAGAGCAAAGCCAACGGCTCACTGTGTAACTTTTTATGA
TCATGTTGGAGCAAGGCATAGAGCATGCCTAAACAATGGAGGGAAGAATG
AGATAATCTTATCAGCTGGTGCAATCGGAAGCCCACAGCTGTTGATGCTG
AGCGGCGTCGGACCCGCCAATGAGCTTCGGAAACGTGGCATCAGAGTGGT
GGTGGACCAGCCTAACGTGGGCCAAGGGATGTCCGATAATCCGATGAATG
CCCTCTTCGTTCCCTCTGCTCGCCCTGTTGAGGTCTCATTGGTTCAAGTT
GTGGGCATCACCAGGTTTGATAGCTACATTGAAACAGCAAGTGGTTTAAG
CCTTGCTCCCTCTTGGGCTCAAGGGCTAACCAGAGACTACAGCTCGTTCC
TAAATAAGACAGACATACCCTCATTGGTGACACCAGAAACAGTGGCCGAA
GCAGTAGAAAACAGTTACTCGTATCTCAATGGAACATAAGAGCCGGAGTC
ATAGTAGAA
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