FC932022

Overview
NameFC932022
Unique NameFC932022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:943..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.641e-107
Identity = 200/232 (86.21%), Postives = 204/232 (87.93%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 697
            KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV           NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV+VDVPD+RGRTEILKVHGSNKKFD DVSL+VIAMRTPGFSG              GRRG+  ISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP
Sbjct:  260 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNKKFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 491          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 8.430e-104
Identity = 192/231 (83.12%), Postives = 201/231 (87.01%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD 694
            KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IV+AATNRADILDSALLRPGRFDRQV+VDVPD++GRT+ILKVH  NKKF++ VSL+VIAMRTPGFSG              GRRGK  ISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD
Sbjct:  266 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD 496          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.203e-103
Identity = 190/231 (82.25%), Postives = 200/231 (86.58%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD 694
            KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IV+AATNRADILDSALLRPGRFDRQV+VDVPD++GRT+ILKVH  NKKFD DVSL++IAMRTPGFSG              GRR +  ISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHA+CGTLTPGHD
Sbjct:  273 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAVCGTLTPGHD 503          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 8.744e-93
Identity = 174/232 (75.00%), Postives = 187/232 (80.60%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 697
            KTLLAKAIAGEAGVPFFS+SGSEF+EMFVGVGASR RDLF KAK N+PCIVF+DEIDAV           NDEREQTLNQ+LTEMDGF GNTG+IVIAATNR +ILDSALLRPGRFDRQV+V +PDIRGR EILKVH  +KK D DVSL VIAMRTPGFSG              GRRGK  I+  EIDDSIDRIVAGMEGT M DGKSK++VAYHEVGHAIC TLT GHDP
Sbjct:  270 KTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEIDDSIDRIVAGMEGTKMIDGKSKAIVAYHEVGHAICATLTEGHDP 501          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 5.865e-89
Identity = 168/232 (72.41%), Postives = 184/232 (79.31%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 697
            KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK+NAPCIVF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IVIAATNRADILDSALLRPGRFDRQV+VDVPD RGR  IL+VH  NKK ++ VSL+ IA RTPGFSG               RR K+ ++  EID SIDR+VAG+EGT + D KSK L+AYHEVGHAI G+L   HDP
Sbjct:  219 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEIDTSIDRVVAGLEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDP 450          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 5.865e-89
Identity = 166/232 (71.55%), Postives = 182/232 (78.45%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 697
            KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN+PCIVF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTGII+IAATNR D+LD+ALLRPGRFDRQVTVDVPD++GR EIL VH  NKK D  +SL++IA RTPGFSG               RR K  I+  EID SIDR++AGMEG  + D K+K L+AYHEVGHAI GTL   HDP
Sbjct:  219 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEIDASIDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHHDP 450          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.802e-88
Identity = 165/232 (71.12%), Postives = 181/232 (78.02%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 697
            KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPC++F+DEIDAV           NDEREQTLNQLLTEMDGFEGNTGII+IAATNR D+LDSAL+RPGRFDRQV VD PD  GR EIL+VH  NKK   +VS+D IA RTPGFSG               RR K+ I+  EIDD++DR+VAGMEGT + D KSK L+AYHEVGHAI GTL   HDP
Sbjct:  218 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDP 449          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.106e-87
Identity = 167/232 (71.98%), Postives = 181/232 (78.02%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 697
            KTLLAKAIAGEA VPFFSISGSEFVEMFVGVGASRVRDLFKKAK+NAPCIVF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IVIAATNRADILDSALLRPGRFDRQV+VDVPD +GR  IL+VH  NKK +  VSL+ IA RTPGFSG               RR K  ++  EID SIDR+VAGMEGT + D KSK L+AYHEVGHAI G+L   HDP
Sbjct:  219 KTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIARRTPGFSGADLANLLNEAAILTARRRKNAMTMSEIDTSIDRVVAGMEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDP 450          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.464e-87
Identity = 163/232 (70.26%), Postives = 180/232 (77.59%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 697
            KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPC+VF+DEIDAV           NDEREQTLNQLLTEMDGFEGN+GIIVIAATNR D+LD ALLRPGRFDRQVTVD PD++GR  IL +H  NKK   +V L  IA RTPGF+G               RR K  I+  E++D+IDR+VAGMEGT + D KSK L+AYHEVGHA+ GTL PGHDP
Sbjct:  257 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEAITMAEVNDAIDRVVAGMEGTPLVDSKSKRLIAYHEVGHALIGTLCPGHDP 488          
BLAST of FC932022 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.203e-87
Identity = 164/232 (70.69%), Postives = 185/232 (79.74%), Query Frame = 2
Query:    2 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG-IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAVISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD 694
            KTLLAKAIAGEAGVPFFS+SGSEF+EMFVGVGASRVRDLF +AK +APC+VF+DEIDAV           NDEREQTLNQLLTEMDGF G  G ++VIAATNR +ILD+ALLRPGRFDR+V+V +PD+RGR EIL VHG+NK+ D  VSL V+AMRTPGFSG              GRRGK  I+  EIDDSIDRIVAG+EGT MTDGKSK LVAYHE+GHA+C TLT GHD
Sbjct:  267 KTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGRRGKDRITVSEIDDSIDRIVAGLEGTSMTDGKSKMLVAYHEIGHAVCATLTAGHD 498          
The following BLAST results are available for this feature:
BLAST of FC932022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
FTSH2_ORYSJ1.641e-10786.21Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH8.430e-10483.12Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH3.203e-10382.25Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH8.744e-9375.00Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_PORPU5.865e-8972.41Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH_GUITH5.865e-8971.55Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH1_SYNY33.802e-8871.12Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FSTH_PORYE1.106e-8771.98Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH2_SYNY32.464e-8770.26Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH6_ORYSJ4.203e-8770.69Cell division protease ftsH homolog 6, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC34203G11EF PostHarveN Citrus clementina cDNA clone C34203G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932022 ID=FC932022; Name=FC932022; organism=Citrus clementina; type=EST; length=698bp
GAAGACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTT
TCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCA
TCTAGAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCAT
TGTATTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAA
TTGGAGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACA
GAAATGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAAC
TAACAGGGCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTG
ATAGACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATA
TTAAAGGTTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGA
TGTGATAGCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACC
TCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGTTATT
TCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGA
AGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATG
AAGTTGGCCACGCAATATGCGGAACTTTGACTCCAGGACACGATCCCG
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