FC932024

Overview
NameFC932024
Unique NameFC932024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932024_ssr332 microsatellite FC932024_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13115 contig Ccv1_Contig13115:989..1661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932024 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 75/215 (34.88%), Postives = 104/215 (48.37%), Query Frame = 3
Query:   54 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDTETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTVAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLG-VAPAVNGSAVN-----QQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPS------ECLLLKNMFDPAMETDPDFDLEIQGDV 662
            +LYVG+LHFN+TE  LR +FEPFG +E +QL +D+ETG+ KG+GF+ F+  E AK A   LNG  E+ GR +KV  VT+      T A SA               S  L   +L+RTGI     G L  +A    G+ +      QQA+ +                     A+    + S      +C  L NMF+P  E +  +D EI+ DV
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTER-----TDASSA---------------SSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDV 444          
BLAST of FC932024 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 67/203 (33.00%), Postives = 95/203 (46.80%), Query Frame = 3
Query:   54 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDTETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTVAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDV 662
            +LYVG+LHFN+TE  LR +FEPFG +E +QL +D+ETG+ KG+GF+ F+  E AK A   LNG  E+ GR +KV  VT+      + +            + L    R  LM +L   G    I  +   A  ++GS                              AA      ++C  L NMF+P  E +  +D EI+ DV
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDV 450          
BLAST of FC932024 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 67/203 (33.00%), Postives = 95/203 (46.80%), Query Frame = 3
Query:   54 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDTETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTVAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDV 662
            +LYVG+LHFN+TE  LR +FEPFG +E +QL +D+ETG+ KG+GF+ F+  E AK A   LNG  E+ GR +KV  VT+      + +            + L    R  LM +L   G    I  +   A  ++GS                              AA      ++C  L NMF+P  E +  +D EI+ DV
Sbjct:  251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDV 450          
BLAST of FC932024 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   54 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDTETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHV 296
            +LYVG+LHFN+TE  LR +FEPFG ++ + L  D++TG+ KG+GF+ F+  E A+ A   LNG  E+ GR ++V  VT+ +
Sbjct:  264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVGHVTERL 343          
The following BLAST results are available for this feature:
BLAST of FC932024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RBM39_PONAB9.749e-2234.88RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE4.838e-2133.00RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN4.838e-2133.00RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RBM23_HUMAN3.967e-1546.91Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionC34203H01EF PostHarveN Citrus clementina cDNA clone C34203H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932024 ID=FC932024; Name=FC932024; organism=Citrus clementina; type=EST; length=673bp
CTAATACTTCTGCTGGAGGGACTGCCACTGGACCTTATGGAGCAATTGAT
AGGAAACTTTATGTGGGAAATCTACACTTTAACATGACTGAGACTCAGCT
TAGAAAGCTCTTTGAACCGTTTGGTCCTGTGGAGCTTGTGCAACTTCCCC
TTGACACTGAGACTGGACAATGCAAGGGTTTTGGATTTGTTCAGTTTGCC
CAGCTTGAACATGCAAAAGCAGCTCAAAGTGCTTTGAATGGGAAATTGGA
GATTGTTGGTAGGACACTGAAGGTTTCATCTGTAACCGATCATGTTGGCA
CGCAAGATACTGTAGCAAAATCTGCGGACTTTGATGATGATGATGGTGGT
GGACTGGCTTTAAATGCTCAATCAAGAGCATTGCTTATGCAGAAGCTGGA
TCGCACCGGTATAGCCACAAGTATTGCGGGCTCCCTTGGAGTAGCACCGG
CGGTTAATGGATCAGCTGTAAATCAGCAAGCCATTAGCTTGCCTGTTGTC
GGGCAACCTGCAGTTCCAGTTCCAGCTGTTACTGCTCCAGTTATACCTAA
TATGGCTGCTGAATTTATTGGATCTCCAAGCGAGTGTTTGTTGTTGAAGA
ATATGTTTGATCCTGCCATGGAGACGGACCCAGATTTTGATCTGGAAATA
CAAGGAGATGTGGAAAGAAGAAT
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