FC932025

Overview
NameFC932025
Unique NameFC932025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14285 contig Ccv1_Contig14285:5..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.655e-33
Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  151 VGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAELAKSITIA 678
            +G+IG GVMG+SM +H+LN G+ V V+ RT  KA+ +L  GA   D+   L+ ++DV+ ++VGYPSDV  V    S+G +   + G  ++DMTT               K   A+DAPVSGGD GA+ GTLAI  GG++   +   P+F+LMG+ + Y G +G GQ  ++   I IA
Sbjct:    5 IGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYF-GSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIA 180          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 57/167 (34.13%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  130 VCPTNTRVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGG 630
            + PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GAH+  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD+ V +  +  F  MGK ++  G
Sbjct:  244 IIPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLG 409          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 65/179 (36.31%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  148 RVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAELAKSITIA 678
            +V +IG GVMG  M  HL+  G+ VTV+NRT +KA Q +   G   AD+P   A   D+VF+ VG   D+R V+L    G + G+  G I+VD TT                N + +DAPVSGG  GA+ G L +  GGD++    + P+ +   +    +G  G GQ  ++   I IA
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVL-GEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIA 180          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 61/183 (33.33%), Postives = 92/183 (50.27%), Query Frame = 1
Query:  109 TVASTDPVCPTNTRVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAEL 657
            + A    + PT+ R+G++G G+MG  + ++LL  G+ VTV+NRT  K    +  GA L  +P  + S  D+ FS V  P   R ++L P SG L G+RPG   V+M+T               +    ++APVSG  + +  G L I A GD SV +  +  F  MGK ++      G  A +
Sbjct:  164 STAINGSITPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGP-SGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARM 345          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 58/174 (33.33%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  109 TVASTDPVCPTNTRVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGG 630
            + A    V PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++  G
Sbjct:  256 STAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLG 428          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  109 TVASTDPVCPTNTRVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGG 630
            + A    + PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++  G
Sbjct:  255 STAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLG 427          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  109 TVASTDPVCPTNTRVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGG 630
            + A    + PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++  G
Sbjct:  256 STAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLG 428          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  109 TVASTDPVCPTNTRVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGG 630
            + A    + PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++  G
Sbjct:  256 STAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLG 428          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 57/178 (32.02%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  148 RVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAELAKSITIA 678
            +VG+IG G+MG+ M  +LL AGY++ V +R       ++  GA  A +  ++A Q DV+ +++     V+ V L   +G + G +PG +++DM++               K    +DAPVSGG+  A  GTL++  GGD+++  K   L  A+ G V + G  G G   +LA  + +A
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALG-ENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVA 178          
BLAST of FC932025 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 57/178 (32.02%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  148 RVGWIGTGVMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAELAKSITIA 678
            +VG+IG G+MG+ M  +LL AGY++ V +R       ++  GA  A +  ++A Q DV+ +++     V+ V L   +G + G +PG +++DM++               K    +DAPVSGG+  A  GTL++  GGD+++  K   L  A+ G V + G  G G   +LA  + +A
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALG-ENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVA 178          
The following BLAST results are available for this feature:
BLAST of FC932025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
YKWC_BACSU9.655e-3341.24Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
GLYR1_XENTR1.397e-2334.13Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
Y1503_SHEFN2.384e-2336.31Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
GLYR1_DANRE2.384e-2333.33Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_BOVIN1.545e-2233.33Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_RAT2.018e-2232.76Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_HUMAN2.018e-2232.76Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_CHICK2.018e-2232.76Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GARR_ECOLI1.708e-2132.022-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL61.708e-2132.022-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionC34203H02EF PostHarveN Citrus clementina cDNA clone C34203H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932025 ID=FC932025; Name=FC932025; organism=Citrus clementina; type=EST; length=679bp
GCACCGCTACTGCCACTCCTACTGGTACTGCGCTCCCGCACGGCTCACTC
TTACTCCCTCTCAGTTTCTTCACTCGTGACTCTCCTCCTCCGCCGCCGCT
CAATGGCCACCGTCGCATCCACCGATCCCGTCTGCCCCACCAACACCCGC
GTCGGCTGGATCGGCACAGGCGTCATGGGTCGATCCATGTGCGCCCACTT
ACTCAACGCCGGCTACACCGTCACCGTCTTCAACCGCACCCTCTCCAAGG
CCCAGCCTCTCCTCGACATCGGTGCCCACCTCGCCGACTCCCCCCATTCG
CTCGCTTCCCAATCCGACGTCGTTTTCTCCATAGTCGGCTACCCTTCCGA
CGTCCGCCACGTCCTCCTCCACCCCTCTTCCGGCGCCCTCTCTGGCCTTC
GTCCCGGTGGAATCATCGTCGACATGACCACCTCCGAACCCTCCCTCGCC
TCCGAGTTATCCGCCGCCGCCTCCTCCAAAAACTGCTCCGCCATCGACGC
CCCTGTGTCCGGCGGTGACCGCGGCGCCAAAACCGGAACCCTCGCTATAT
TCGCCGGAGGGGACGAATCCGTAGTTCAAAAGTTAAATCCCCTTTTTGCC
CTCATGGGGAAAGTTAATTACATGGGTGGCAGTGGGAAAGGACAATTCGC
NGAGCTGGCGAAATCAATCACGATCGCTT
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