FC932032

Overview
NameFC932032
Unique NameFC932032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.147e-63
Identity = 132/199 (66.33%), Postives = 149/199 (74.87%), Query Frame = 2
Query:   98 MSDSEAKQLTEMRTEADVKRLKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ-----------ARAMASEVQRVGVVDAATTIMNSMY-----------SKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            M++SEAKQ  E     + KRLKYLDFVQVAAIY+IV FS++YEYAKE SGPLKPGVQ VE TVKTV+GPVYE  +DVPFELL FVDRKVE S+ ELERHVPSLVK+AS Q           A A+ASEVQR GVVD A  I  ++Y           SKYE VAEQYA+SAWR LNRLP+FPQVAQ+V+PTAA WSEKY
Sbjct:    1 MAESEAKQQPET-VHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKY 198          

HSP 2 Score: 25.409 bits (54), Expect = 1.147e-63
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  645 TEERGYPIATYLPL 686
            T ERGY +A YLPL
Sbjct:  205 TAERGYTVALYLPL 218          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 95/161 (59.01%), Postives = 122/161 (75.78%), Query Frame = 2
Query:  146 DVKRLKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMASEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            D  +LK+L+F+QVAA+Y    FST+YE AK+ +GPLK GV+ +E  V+TVL P+YE  HDVPF+LL FVDRKV++   ++E +VPSLVKQASSQA  +A+EVQR GVVD   +I  S+  KYE  AE YA + WR LN+LP+FP+VA +VIPTA  WSEKY
Sbjct:   37 DEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKY 197          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.561e-45
Identity = 95/186 (51.08%), Postives = 131/186 (70.43%), Query Frame = 2
Query:  137 TEADVKRLKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ-----------ARAMASEVQRVGVVDAATTIMNSMYSKYEQV-----------AEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            T+ + +RLKYL FVQ AA+  ++ F+ +Y  AK+ SGPLKPGV++VE  VKTV+GPVYE  HDVP E+L+++D+KV+ S+ EL+R VP +VKQ S+Q           ARA+ASEV+R GVV+ A+ +  S+YSKYE             AEQ A+SAW+ LN+LP+FP++AQ+ +PTAA  SEKY
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKY 200          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.005e-39
Identity = 85/178 (47.75%), Postives = 118/178 (66.29%), Query Frame = 2
Query:  128 EMRTEADVKRLKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMASEVQRVGVVDAATTIMNS-----------MYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            EM   A+ +RL+YL+FVQ AA  ++V  +  Y YAK+ +GPL+PGV  VE TVK V+GPVY+  H VP +LL+F+DRKV ES+ EL+R VP +VK+A   AR+ A+EV++ G+V  AT +  S           +Y++YE VAE+ A  AW  LNRLP+ P V + V+P AA  S +Y
Sbjct:   25 EMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARY 202          

HSP 2 Score: 21.1718 bits (43), Expect = 1.005e-39
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  651 ERGYPIATYLPL 686
            +RG  +ATYLPL
Sbjct:  211 KRGSAVATYLPL 222          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.005e-39
Identity = 85/178 (47.75%), Postives = 118/178 (66.29%), Query Frame = 2
Query:  128 EMRTEADVKRLKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMASEVQRVGVVDAATTIMNS-----------MYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            EM   A+ +RL+YL+FVQ AA  ++V  +  Y YAK+ +GPL+PGV  VE TVK V+GPVY+  H VP +LL+F+DRKV ES+ EL+R VP +VK+A   AR+ A+EV++ G+V  AT +  S           +Y++YE VAE+ A  AW  LNRLP+ P V + V+P AA  S +Y
Sbjct:   25 EMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARY 202          

HSP 2 Score: 21.1718 bits (43), Expect = 1.005e-39
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  651 ERGYPIATYLPL 686
            +RG  +ATYLPL
Sbjct:  211 KRGSAVATYLPL 222          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.428e-39
Identity = 82/174 (47.13%), Postives = 118/174 (67.82%), Query Frame = 2
Query:  131 MRTEADVKRLKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMASEVQRVGVVDAATTIMN--------SMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            M  E + +RLKYLDFV+ A +Y + SFST+Y YAK+ISGPLKPGV  +E  VKTV+ PVY     +P E ++FVD+ V+ S+  L+  VP ++KQ S+Q  ++A +  R+ V+D A+++ N        ++Y+  E  AEQYA+  WR LN+LP+ PQVA +V+PTA  +SEKY
Sbjct:    1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRI-VLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKY 169          

HSP 2 Score: 23.8682 bits (50), Expect = 6.428e-39
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  639 RCTEERGYPIATYLPL 686
            R T E+GY +++YLPL
Sbjct:  174 RGTTEQGYRVSSYLPL 189          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.797e-37
Identity = 82/137 (59.85%), Postives = 101/137 (73.72%), Query Frame = 2
Query:  218 VYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMASEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            +Y YAKE +GPLKPGV  VE  VKTV+ PVY+  H VP ELL++ DRKV    GEL+RHVPS VK+ SSQAR++ SEV+R GV    +T   ++YSKYE  AEQ A+SAWR LN+LP+FPQVA  V+P AA  +EKY
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKV----GELDRHVPSNVKKVSSQARSVVSEVRRDGV----STFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKY 134          

HSP 2 Score: 21.557 bits (44), Expect = 5.797e-37
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  651 ERGYPIATYLPL 686
            E+GY ++ YLPL
Sbjct:  143 EKGYRVSAYLPL 154          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 62/175 (35.43%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  125 TEMRTEADVKRLKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAM---ASEVQRVGVVDAAT----TIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKY 628
            TE +   +V  LK+L FV++A I+I+ S S +YEYAK+ SGPLK  V+ VE  V TV+ PVY+   DVP  LL F+D KV E   + + H P + K+  +QA  +   A+E  +  V +A T       N   ++Y+      ++  W  LN+      +    +P AA +S +Y
Sbjct:    3 TEKKNSKEVA-LKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRY 176          
BLAST of FC932032 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  158 LKYLDFVQVAAIYIIVSFSTVYEYAKEISGPLKPGVQAVEATVKTVLGPVYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ 427
            LKYL FVQ AA Y + +FS VY +AK+ SGPL+PGV  +E  VK V  P+Y     +P   L+FVD  V  S+  ++R +P +VK AS Q
Sbjct:   15 LKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQ 104          
The following BLAST results are available for this feature:
BLAST of FC932032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SRP_VITRI1.147e-6366.33Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y2778_ARATH9.781e-4959.01REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
Y3550_ARATH6.561e-4551.08REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ1.005e-3947.75REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.005e-3947.75REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR6.428e-3947.13Small rubber particle protein OS=Hevea brasiliensi... [more]
SRP_PHAVU5.797e-3759.85Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y1736_ARATH1.127e-2035.43REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
REF_HEVBR3.176e-1547.78Rubber elongation factor protein OS=Hevea brasilie... [more]
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Properties
Property NameValue
Genbank descriptionC34203H09EF PostHarveN Citrus clementina cDNA clone C34203H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932032 ID=FC932032; Name=FC932032; organism=Citrus clementina; type=EST; length=686bp
GGAGCCTTTTCGTTACATTCCAAGAAACTCCTTTCGAGTTAAATATCTTT
CAAGAAATATCGCAAAATCGATTTCCAAAGAGAGTGCTCTGTGCAAAATG
TCGGATTCAGAAGCCAAACAGCTTACGGAGATGAGGACTGAAGCAGATGT
GAAAAGATTGAAGTATTTGGATTTCGTACAAGTAGCAGCGATCTACATTA
TAGTGAGCTTTTCAACTGTATACGAATACGCCAAAGAAATCTCCGGCCCG
CTTAAACCGGGCGTCCAAGCCGTTGAGGCAACCGTGAAAACCGTTCTCGG
CCCCGTTTATGAGGATCTCCACGACGTTCCGTTTGAACTTCTCGAGTTCG
TCGATCGCAAGGTGGAGGAATCTCTGGGAGAATTAGAGAGGCACGTGCCT
TCACTAGTGAAGCAGGCATCGAGCCAGGCACGAGCCATGGCTTCTGAGGT
TCAGCGCGTCGGTGTGGTTGACGCCGCGACAACGATTATGAACAGCATGT
ATAGTAAGTACGAGCAAGTGGCCGAGCAGTACGCTTTGTCGGCTTGGCGC
TGGCTGAATCGGCTTCCGGTCTTCCCGCAAGTGGCTCAGATCGTGATACC
CACGGCTGCTTGCTGGTCTGAGAAGTATATCAACTGGTCGTTGTACGGAA
GAGAGGGGATATCCTATCGCAACTTATCTACCGTTG
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