FC932034

Overview
NameFC932034
Unique NameFC932034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11449 contig Ccv1_Contig11449:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC932034 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 92/191 (48.17%), Postives = 106/191 (55.50%), Query Frame = 3 
Query:  123 ITLTYGRPLPPSDETCYPSSSASDGDFDYARPKFSSHSEPSAYADEALNNEYSSYARPKXXXXXXXXXXXXXXXXXXXXXXXAYGIQPGMGRXXXXXXXXXXXXXXXXXAKRPDSQEYGSGYGKRPESE-EYGSGYGRKPDSEVYDSGYGRRPESG-ESGFGGRTESEYGGS-AYGRKPEYESGYGQKPEY 686
            IT+ YGRP+PPSDETCYP SS  D DF+Y RP+F+   EPSAY DEALN EYSSY+RPK                        YG + G GR                   R   Q YGSGYG R E+E EYGSG G + + E     YGRRPESG  SG+GGR+ESEY    +YGR  E E GY +KP Y
Sbjct:   28 ITVIYGRPIPPSDETCYPLSSGVDDDFEYERPEFTQIHEPSAYGDEALNTEYSSYSRPK-PRPAFRPDSGGGGHVQGERPNPGYGSESGYGRKPESEYGSGYGGQTEVEYGRRPEQSYGSGYGGRTETESEYGSGGGGRTEVE-----YGRRPESGLGSGYGGRSESEYERKPSYGRSEEQEEGY-RKPSY 211
The following BLAST results are available for this feature:
BLAST of FC932034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5957_ARATH1.161e-3648.17Uncharacterized protein At5g39570 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34203H11EF PostHarveN Citrus clementina cDNA clone C34203H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932034 ID=FC932034; Name=FC932034; organism=Citrus clementina; type=EST; length=698bp
GGAAATAAACAAAACAAAATCCCGATCGGAACAGAGAAACAATGCCGTAC
TACGCTGACAATGACGATGACGTTACTGATTTCGACGATTACGATCCAAC
ACCCTACGATGGTGGATACGACATCACTTTGACTTACGGCCGTCCTCTGC
CACCGTCCGATGAGACTTGTTACCCATCATCGTCGGCGTCAGATGGGGAC
TTCGACTACGCTCGTCCCAAGTTCTCGTCGCACTCGGAGCCTTCAGCCTA
CGCTGACGAAGCTCTCAATAACGAGTACAGCTCCTACGCCCGACCAAAGC
CTCGTCCCGGTTTCGTACCCGGGTCAGGGGGTGGGTCGGGTTATGGAGGA
AGGCCCCAGCCGCAGCCGGCGTATGGGATTCAGCCTGGAATGGGAAGGCC
CGAACCTTATGGGTCGGGGAGGTCTGAATCTGAATATGGTTCTGGGTATG
CGAAGAGGCCTGATTCGCAGGAATATGGATCTGGGTACGGAAAGAGACCC
GAGTCGGAGGAATATGGATCTGGGTACGGCAGGAAACCTGATTCCGAGGT
GTATGACTCTGGATATGGGCGGAGACCCGAGTCGGGTGAATCCGGATTTG
GTGGTAGGACTGAGTCCGAGTATGGAGGATCAGCGTATGGACGAAAACCC
GAATATGAGTCCGGTTATGGCCAGAAACCGGAATATGAATCTGGCTTT
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