FC932042

Overview
NameFC932042
Unique NameFC932042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VPS26_SCHPO (Vacuolar protein sorting-associated protein 26 OS=Schizosaccharomyces pombe GN=vps26 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.756e-88
Identity = 153/220 (69.55%), Postives = 186/220 (84.55%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQAPE 694
            D+GN +EF   VQELA+PGE+ H Q F F FK V+K YESY G NVKLR+  RVTVSR+M DVIREKDLWVY +   PE NS I+MDVGI++CLHIEFEYSK+KYHLKDVI+G+IYF+LVR+K++ ME+SIIRRET G+ PNQY+ SET+ RF+IMDG+P+RGETIP+R+FL G+ LTPTFRDVNKK+S RYYLSL+L+DED RRYFKQSEI L+R+  E
Sbjct:   77 DKGNIHEFTRSVQELASPGEMRHAQMFEFEFKHVDKPYESYIGKNVKLRYICRVTVSRKMKDVIREKDLWVYRFENEPETNSLIRMDVGIDECLHIEFEYSKNKYHLKDVIIGKIYFILVRIKVQRMEVSIIRRETIGTSPNQYSNSETITRFQIMDGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLILVDEDQRRYFKQSEITLWRRRDE 296          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: V26BB_XENLA (Vacuolar protein sorting-associated protein 26B-B OS=Xenopus laevis GN=vps26b-B PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.049e-85
Identity = 149/217 (68.66%), Postives = 184/217 (84.79%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGEL   Q+F F F  VEK YESY G NVKLR+F+R T+SRR+ DV +E D+ VY+    PE NS IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KIKHME+ II+RETTG+ PN Y+E++T+ ++EIMDG+P RGE+IPIRLFL G++LTPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ EI L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGELSQSQSFDFEFTHVEKPYESYTGQNVKLRYFLRATLSRRLNDVAKEMDIVVYTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEIVLWRK 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: V26BL_DANRE (Vacuolar protein sorting-associated protein 26B-like OS=Danio rerio GN=vps26bl PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.288e-85
Identity = 147/217 (67.74%), Postives = 184/217 (84.79%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGE+   QTF F F  VEK YESY G NVKLR+F+R TVSRR+ D+ +E D+ V++    PE NS IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KIKHME+ II+RETTG+ PN Y+E++T+ ++EIMDG+P RGE+IPIRLFL G+++TPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ EI L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGEMAQSQTFDFEFTHVEKPYESYTGQNVKLRYFLRATVSRRLNDICKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYEMTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEITLWRE 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26B_MOUSE (Vacuolar protein sorting-associated protein 26B OS=Mus musculus GN=Vps26b PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.907e-85
Identity = 146/217 (67.28%), Postives = 184/217 (84.79%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGE+   Q F F F  VEK YESY G NVKLR+F+R T+SRR+ DV++E D+ V++    PE NS IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KIKHME+ II+RETTG+ PN Y+E++T+ ++EIMDG+P RGE+IPIRLFL G++LTPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ E+ L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRK 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26B_HUMAN (Vacuolar protein sorting-associated protein 26B OS=Homo sapiens GN=VPS26B PE=1 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 6.907e-85
Identity = 146/217 (67.28%), Postives = 184/217 (84.79%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGE+   Q F F F  VEK YESY G NVKLR+F+R T+SRR+ DV++E D+ V++    PE NS IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KIKHME+ II+RETTG+ PN Y+E++T+ ++EIMDG+P RGE+IPIRLFL G++LTPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ E+ L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRK 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: V26BA_XENLA (Vacuolar protein sorting-associated protein 26B-A OS=Xenopus laevis GN=vps26b-A PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 9.021e-85
Identity = 147/217 (67.74%), Postives = 185/217 (85.25%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGE+   Q+F F F  VEK YESY G NVKLR+F+R T+SRR+ DV++E D+ V++    PE NS IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KIKHME+ II+RETTG+ PN Y+E++T+ ++EIMDG+P RGE+IPIRLFL G++LTPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ EI L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGEISQSQSFDFEFTHVEKPYESYTGQNVKLRYFLRATLSRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEIVLWRK 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26B_XENTR (Vacuolar protein sorting-associated protein 26B OS=Xenopus tropicalis GN=vps26b PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.178e-84
Identity = 146/217 (67.28%), Postives = 185/217 (85.25%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGE+   Q+F F F  VEK YESY G NVKLR+F+R T+SRR+ DV++E D+ V++    PE NS IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KIKHME+ II+RETTG+ PN Y+E++T+ ++EIMDG+P RGE+IPIRLFL G++LTPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ E+ L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGEISQSQSFDFEFTHVEKPYESYTGQNVKLRYFLRATLSRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRK 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26B_PONAB (Vacuolar protein sorting-associated protein 26B OS=Pongo abelii GN=VPS26B PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.010e-84
Identity = 146/217 (67.28%), Postives = 183/217 (84.33%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGE+   Q F F F  VEK YESY G NVKLR+F+R T+SRR+ DV++E D+ V++    PE NS IKM+VGIEDCLHIEFEY+KSKYHLKDVIVG+IYFLLVR+KIKHME+ II+RETTG+ PN Y+E+ T+ ++EIMDG+P RGE+IPIRLFL G++LTPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ E+ L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENVTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRK 295          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VPS26_DICDI (Vacuolar protein sorting-associated protein 26 OS=Dictyostelium discoideum GN=vps26 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.637e-84
Identity = 143/218 (65.60%), Postives = 187/218 (85.78%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMA-DVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNHYEF SLV+ELA  GEL   +TF ++F +VEKQYESYNG NV+LR+FVR+T+ R  A ++++E D+WV ++  PPE+NS IKM+VGIEDCLHIEFEY+KSKYHLKDVI+G+IYFLLVR+KIK+ME+++I+RE+TGS PN +NESETL +FEIMDG+P RGE+IP+RLFL  FDLTPT+R V+ K+S +Y+L+L L+DED ++YFKQ EI L+R+
Sbjct:   81 DRGNHYEFTSLVRELAPAGELTENKTFSYDFSNVEKQYESYNGTNVRLRYFVRLTIGRSFASNIVKEYDIWVINFVKPPESNSNIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKYMEIALIKRESTGSGPNVFNESETLTKFEIMDGAPVRGESIPVRLFLSVFDLTPTYRSVHNKFSVKYFLNLALVDEDDKKYFKQQEITLWRR 298          
BLAST of FC932042 vs. ExPASy Swiss-Prot
Match: VP26B_DANRE (Vacuolar protein sorting-associated protein 26B OS=Danio rerio GN=vps26b PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.902e-83
Identity = 145/217 (66.82%), Postives = 183/217 (84.33%), Query Frame = 2
Query:   35 DRGNHYEFLSLVQELAAPGELLHPQTFPFNFKSVEKQYESYNGINVKLRHFVRVTVSRRMADVIREKDLWVYSYRMPPENNSPIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDEDARRYFKQSEIALYRQ 685
            DRGNH+EF+SLV++LA PGEL   QTF F F  VEK YESY G NVKLR+F+R T+SRR+ D+ +E D+ V +    PE NS IKM+VGIEDCLHIEFEY+KSKYHL+DVIVG+IYFLLVR+KIKHME+ II+RETTG+ P+ Y+E++T+ ++EIMDG+P RGE+IPIRLFL G+++TPT RD+NKK+S RYYL+LVLIDE+ RRYFKQ EI L+R+
Sbjct:   79 DRGNHHEFVSLVKDLARPGELSQSQTFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDISKEMDIVVQTLCTYPEINSSIKMEVGIEDCLHIEFEYNKSKYHLRDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPSVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYEMTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEITLWRK 295          
The following BLAST results are available for this feature:
BLAST of FC932042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VPS26_SCHPO1.756e-8869.55Vacuolar protein sorting-associated protein 26 OS=... [more]
V26BB_XENLA4.049e-8568.66Vacuolar protein sorting-associated protein 26B-B ... [more]
V26BL_DANRE5.288e-8567.74Vacuolar protein sorting-associated protein 26B-li... [more]
VP26B_MOUSE6.907e-8567.28Vacuolar protein sorting-associated protein 26B OS... [more]
VP26B_HUMAN6.907e-8567.28Vacuolar protein sorting-associated protein 26B OS... [more]
V26BA_XENLA9.021e-8567.74Vacuolar protein sorting-associated protein 26B-A ... [more]
VP26B_XENTR1.178e-8467.28Vacuolar protein sorting-associated protein 26B OS... [more]
VP26B_PONAB2.010e-8467.28Vacuolar protein sorting-associated protein 26B OS... [more]
VPS26_DICDI7.637e-8465.60Vacuolar protein sorting-associated protein 26 OS=... [more]
VP26B_DANRE2.902e-8366.82Vacuolar protein sorting-associated protein 26B OS... [more]

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Properties
Property NameValue
Genbank descriptionC34204A07EF PostHarveN Citrus clementina cDNA clone C34204A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932042 ID=FC932042; Name=FC932042; organism=Citrus clementina; type=EST; length=714bp
AAGGTGCAATTTATTGGCACGATTGAGATGTTCTGACCGAGGCAACCATT
ATGAATTCCTTTCCCTGGTACAGGAGCTCGCTGCGCCCGGCGAGCTGCTC
CACCCGCAGACCTTCCCTTTCAATTTCAAGAGCGTCGAAAAGCAATACGA
GTCTTACAATGGCATCAACGTTAAGCTGCGCCACTTTGTCCGGGTGACCG
TCTCGCGGCGCATGGCGGACGTTATTCGGGAGAAGGATTTGTGGGTGTAC
TCGTACCGCATGCCACCTGAGAACAACAGCCCTATCAAGATGGACGTTGG
TATTGAGGACTGCCTCCATATCGAATTCGAATATTCCAAATCCAAGTATC
ATCTTAAGGATGTGATTGTTGGCCGTATCTATTTCTTGCTTGTGCGGCTC
AAGATCAAGCATATGGAATTGTCTATCATTCGGCGGGAGACAACAGGATC
ACCGCCAAATCAATATAATGAGAGTGAGACTTTGGTACGCTTTGAGATCA
TGGATGGTTCGCCATCGAGAGGTGAAACTATTCCAATCCGTCTGTTCCTT
GGTGGATTCGACTTGACGCCGACATTCCGCGACGTTAACAAGAAGTACTC
GACAAGGTACTATCTCAGTCTCGTACTGATTGACGAAGATGCCCGTCGCT
ACTTTAAACAGTCCGAAATTGCGCTCTACCGTCAAGCCCCCGAGATCGCC
CCGACGCCCAGATC
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