FC932047

Overview
NameFC932047
Unique NameFC932047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932047_ssr63 microsatellite FC932047_ssr63:63..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10204 contig Ccv1_Contig10204:19..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  246 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 659
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 195          
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  246 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 659
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 198          
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 70/138 (50.72%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  246 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 659
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N G
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRG 197          
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/180 (42.78%), Postives = 102/180 (56.67%), Query Frame = 3
Query:  120 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 659
            M+  +DMSLDDIIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I  +   PA + N G
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQSGNRG 167          
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  246 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 659
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN G
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRG 198          
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  246 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 617
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188          
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  246 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 617
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of FC932047 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  246 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 617
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184          
The following BLAST results are available for this feature:
BLAST of FC932047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_TAEGU7.409e-3151.45THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_BOVIN9.677e-3151.45THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE1.264e-3050.72THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
REFP2_MOUSE2.156e-3042.78RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_HUMAN3.677e-3050.72THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_XENTR5.310e-2952.42THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA1.545e-2851.61THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA1.001e-2750.81THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34204A12EF PostHarveN Citrus clementina cDNA clone C34204A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932047 ID=FC932047; Name=FC932047; organism=Citrus clementina; type=EST; length=706bp
GGTTCGAGGAAACCCTAAATTTCCTCCTCAGCCTTCCTCTCTTTCTACTT
TTCCTCTTAATTTCTCTCTCTCTTATTACGATTTTATCTTTGATTTTCTA
TTTTCTGTTATAGTAAAAAATGTCAAGCGCTTTAGATATGTCTCTTGACG
ATATCATCAAGAACAACAAAAAGTCTGGATCTGGCAACTTCCGGGGCCGG
GGTCGAGGATCCGGACCCGGCCCTGCTCGTCGCATCCCCAATCGTGGTGC
AAACCGTGTGGCGCCGTATACCACCGCCAAAGCGCCGGAGACGACGTGGC
AGCACGATATGTTTGCAGATCAGGTGAGTGCTTTCCCGGTACAGCAGGCG
GGGCGGGCTTCAGCTATAGAGACTGGAACGAAGCTGTACATATCAAATCT
GGATTACGGTGTCTCTAATGAAGACATCAAGGAACTGTTTTCTGAAGTTG
GTGACTTGAAGCGGTACTCAATCCATTATGATAGAAGTGGGAGATCAAAG
GGAACGGCAGAGGTTGTCTATTCACGACGAGCAGATGCTGTGGCTGCAGT
CAAGAGATACAACAATGTGCAGCTTGATGGGAAGCCGATGAAAATTGAGA
TTGTGGGAACAAACATTGCAACCCGTACTGCAGCTCCAGCTGCTAATGTC
AACTTTGGAAATTTCAATGGTGTTCCTAGAGGTGGACAAGGAAGAGGTGG
TGCATT
back to top