FC932054

Overview
NameFC932054
Unique NameFC932054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932054_ssr70 microsatellite FC932054_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13330 contig Ccv1_Contig13330:125..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.780e-75
Identity = 143/190 (75.26%), Postives = 163/190 (85.79%), Query Frame = 2
Query:  131 MNDLFSGSFSRFRSEQASPDRP--HHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS 694
            MNDLFS SFSRFRS + SP R        +QM     STGGVNLDKFF+DVESVK+ELKEL+RL+ +L + HE+SKTLHNAKAVKDLRS+MD DV  ALK AK+IK++LEALDR+NAANRSLPGCGPGSSSDRTRTSV+NGLRKKL DSM+SFN LR+ ISSEYR+TVQRRY+TVTGENPDE+TLDRLIS
Sbjct:    1 MNDLFSSSFSRFRSGEPSPRRDVAGGGDGVQMANPAGSTGGVNLDKFFEDVESVKEELKELDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLIS 190          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.727e-54
Identity = 116/192 (60.42%), Postives = 147/192 (76.56%), Query Frame = 2
Query:  131 MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTG----GVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS 694
            MNDL SGSF    ++ +SP  PH H  I+M++   S G    G NLD FF DVE V ++LKEL+RL ++L++S+E+SKTLHNA AVK+L+ +MDADV+AALK A+ +K  LEALDR+N  NRSLP  GPGSSSDR RTSVVNGLRKKLKD ME F+ +R+ I++EY++TV R  +TVTGE PDE TL+RLIS
Sbjct:    1 MNDLLSGSFKTSVADGSSP--PHSHN-IEMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLKELDRLCHNLRSSNEQSKTLHNANAVKELKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLIS 189          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.654e-51
Identity = 101/188 (53.72%), Postives = 141/188 (75.00%), Query Frame = 2
Query:  131 MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS 694
            MNDLFS SF ++   +            QM +  +    +NLDKFF+DVE+VKD +K +E L+ SLQ S+E+ KT+HNAK VK+LR++MD DV+  LK  K+IK +LEAL+++NA +R++ GCGPGSS+DRTRTSVV+GL KKLKD M+SF  LR R+++EY++TV+RRY+T+TGE  DE+T++ LIS
Sbjct:    1 MNDLFSSSFKKYTDLKQQA---------QMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLIS 179          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.400e-50
Identity = 99/188 (52.66%), Postives = 141/188 (75.00%), Query Frame = 2
Query:  131 MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS 694
            MNDLFS SF + ++              Q+ +       +NLDKFF+DVE+VKD++K +E L+  LQ S+E+ KT+HNAK VK+LR++MD DV+  LK  K+IK +LEAL+++NA +R++PGCGPGSS+DRTR+SVV+GL KKLKD M+SF  LR R+++EY++TV+RRY+T+TGE  DE+T+D LI+
Sbjct:    1 MNDLFSNSFKKNQA--------------QLGDVEAGQETMNLDKFFEDVENVKDDMKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANANSRNVPGCGPGSSTDRTRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIA 174          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.712e-48
Identity = 97/189 (51.32%), Postives = 138/189 (73.02%), Query Frame = 2
Query:  131 MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPN-STGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS 694
            MNDL S SF R+          +H   +   E+ N S    NLD+FF  VESVK+++K ++ +H  LQ ++E+SKT+H++KAVK LR+RMD+ V+  LK  K+IK +L AL++SNAA R + GCGPGSS+DRTRTSVV+GL KKLKD M+ F  LR ++++EY++TV+RRY+TVTG+  DE+T+++LIS
Sbjct:    1 MNDLISSSFKRYTDL-------NHQVQLDDIESQNVSLDSGNLDEFFGYVESVKEDMKAVDEIHKRLQDANEESKTVHDSKAVKKLRARMDSSVTEVLKRVKMIKTKLVALEKSNAAQRKVAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLIS 182          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  131 MNDLFSGS--FSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLI 691
            MNDL  GS  FSR RS ++  +  H          P ++G + L  FF  V+ ++ + ++L++  N LQ +HE++K +  A A+K ++ RM+ DV    + ++ IK ++E LDR N  NR+ PGCG G+  DRTRT+    ++KK KD +  F  LRQ I  EYR+ V+RR +TVTG+  DE+ +DRLI
Sbjct:    1 MNDLLKGSLEFSRDRSNRSDIESGH---------GPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLI 180          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 80/187 (42.78%), Postives = 106/187 (56.68%), Query Frame = 2
Query:  131 MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLI 691
            MNDL  GSF   R + +          +++ E      G  L+ FF  V+ +  +  +L++L   LQ SHE+SK++  A A+K ++  M+ DV      A+ IK +LE LDR N ANR  PGC  GS  DR+RT+    L+KKLKD M  F  LR+ I  EYRD V RR YTVTGE  DE T+D LI
Sbjct:    1 MNDLLKGSFELPRGQSS------REGDVELGEQQGGDQG--LEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYTVTGERADEDTIDELI 179          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28
Identity = 57/148 (38.51%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  251 NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS 694
            NL  FF ++E++K  ++E+  L   LQ  +E++K+ H+ K ++ LR RM++++    + A  +K  +E L++ N ANR+      GS  DRTRTS+ NG+RKKL+D+M  F+ LR+RI ++YR+ ++R+Y+  TGE P  + ++++IS
Sbjct:   46 NLSGFFQEIETIKTLIEEITHLLLDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNVANRT--SFKEGSCVDRTRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRKYFLATGEEPSNEDMEKMIS 191          
BLAST of FC932054 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 69/196 (35.20%), Postives = 116/196 (59.18%), Query Frame = 2
Query:  131 MNDLFSGSFSRF--------RSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS 694
            MNDL + SF  +        +  +A PD       ++M          NL  F ++ E VK E+  +      ++  HE+SK +H A++VK LR+++  ++ + L+ AK IK +LE +D++N   + L G    +   R+RT+V NGLRKKLK+ M  F  LRQ++ SEY++TV+RRY+TVTGE+ +++ ++++I+
Sbjct:    1 MNDLMTKSFMSYVDLKKAAMKDMEAGPD-----FDLEMASTKADKMDENLSSFLEEAEYVKAEMGLISETLARIEQYHEESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEIKRLSG----TPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIIT 187          
The following BLAST results are available for this feature:
BLAST of FC932054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SY121_ARATH4.780e-7575.26Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH2.727e-5460.42Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY124_ARATH1.654e-5153.72Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY125_ARATH1.400e-5052.66Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY123_ARATH1.712e-4851.32Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY131_ARATH6.315e-3540.21Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY132_ARATH9.119e-3442.78Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY112_ARATH7.477e-2838.51Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=... [more]
SY111_ARATH1.666e-2735.20Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC34204B07EF PostHarveN Citrus clementina cDNA clone C34204B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932054 ID=FC932054; Name=FC932054; organism=Citrus clementina; type=EST; length=696bp
GATTCTTTCTAAAACTGCTAATCTTCTTCTTCGTCTGCTGCATTTCGAGA
TTATTTCCGTATTGGTGAATTATTTATTTATTAGAATATAATTATTATCT
GATATTCGCCCCAAAAAACAAAAAAAAAAAATGAACGACCTATTCTCCGG
ATCCTTCTCTCGCTTCCGCAGCGAGCAAGCTTCTCCCGATCGCCCGCACC
ACCACACGACGATCCAGATGACGGAGAACCCGAACTCCACCGGCGGAGTC
AACCTCGACAAGTTCTTCGACGACGTCGAATCGGTCAAGGACGAGCTCAA
GGAGCTCGAAAGGCTACACAACAGCCTCCAGACGTCTCATGAGAAGAGCA
AGACCTTACACAACGCGAAAGCCGTGAAAGACCTGCGCTCCCGAATGGAC
GCTGACGTCAGCGCCGCGTTGAAGAATGCCAAGTTGATCAAGATCCGCCT
GGAGGCGCTGGACCGGTCCAACGCCGCGAATCGGAGCCTCCCCGGCTGCG
GACCGGGATCTTCCTCGGACCGGACCAGGACCTCCGTGGTCAACGGGCTG
AGGAAGAAGCTGAAGGACTCGATGGAGAGTTTTAACGAGTTGAGGCAGAG
GATTTCGTCCGAGTATAGGGACACCGTTCAGAGGAGGTACTATACGGTCA
CCGGAGAGAATCCCGACGAGAAGACCTTAGATCGCTTGATTTCTAC
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