FC932060

Overview
NameFC932060
Unique NameFC932060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932060 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  478 IMQILDKEAVENVKSQREIPDIKPGYIVQLXVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLF 702
            IM IL+K+AV   +  R +P I+ G IVQ+ + +PENKRR+S  KGIVI+R+NAGI TT R+RR++AGVGVE +F
Sbjct:  122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVF 196          
BLAST of FC932060 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 38/75 (50.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  478 IMQILDKEAVENVKSQREIPDIKPGYIVQLXVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLF 702
            +M IL+++A+E  +  R +P+I+ G IV++ + +PENKRR+S  KGIV++R+NAGI TT R+RR++AG+GVE +F
Sbjct:  114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVF 188          
BLAST of FC932060 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 38/75 (50.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  478 IMQILDKEAVENVKSQREIPDIKPGYIVQLXVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLF 702
            IM +L+K+A+E  ++ R +P ++ G IV++ + +PENKRR+S  KGIV++R+NAGI TT R+RR++AG+GVE +F
Sbjct:  118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVF 192          
The following BLAST results are available for this feature:
BLAST of FC932060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK19_SPIOL6.140e-1757.3350S ribosomal protein L19, chloroplastic OS=Spinac... [more]
RK191_ARATH3.980e-1650.6750S ribosomal protein L19-1, chloroplastic OS=Arab... [more]
RK192_ARATH5.198e-1650.6750S ribosomal protein L19-2, chloroplastic OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC34204C01EF PostHarveN Citrus clementina cDNA clone C34204C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932060 ID=FC932060; Name=FC932060; organism=Citrus clementina; type=EST; length=706bp
GATTTGTACCAGAAAATCTCCCAATCTTTTTTACTCGCTCAAAAGCGAAG
CTAATCCCGTACCTCTTCAATTTTATTAAAAATGCAGTCCTTTCGTGGGA
GCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTGTTCA
ATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCCATTC
TTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGCTCGC
AGGTAAAATATGGCTATCAAACCGAGTCTTGCGGTTCTTCGAACTATTAC
ATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGCCACA
TTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCAGCTT
CATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAAATTT
AAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATAAGGA
AGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAGCCTG
GTTATATCGTGCAACTAANAGTGGTAATTCCAGAGAACAAGAGACGTGTT
TCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAAGTAC
TACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCTCTTT
TCCTTT
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