FC932068

Overview
NameFC932068
Unique NameFC932068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig724 contig Ccv1_Contig724:134..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 78/221 (35.29%), Postives = 115/221 (52.04%), Query Frame = 2
Query:   74 KNNTQESEEYHHES-----KVKELKAAIGPLYGRSL-----QYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGFRDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKFVYPKNK 706
            +N T E EE + E      ++KE+  A        L      + +  C+ RYL A  W+V  AKK + +TL WR  +    +  +EI  E  TGK    G+ D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K++  F+D  T +K+KF  P ++
Sbjct:  590 RNLTSEQEEMYEEVLKYCLELKEIPVASNSSKKTDLIELERLWLTRECILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEPLDR 809          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 61/199 (30.65%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  122 KELKAAIGPLYGRS-LQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIR-WNEIAVEGETGKLFRAGFRDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAI--LNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKFVYPK 700
            KE+K+    L   + + +C+D C  RYL ARN+ V K++KML +TL+WR  +RP++I+   +I   G  G ++    RD+ GR ++   P      ++ +++  ++LVY +E     ++ P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK++  FL+  T  KV+F+  K
Sbjct:   53 KEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVY-VNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSK 249          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 71/188 (37.77%), Postives = 98/188 (52.13%), Query Frame = 2
Query:  170 YCSDACLKRYLEARNWNVDKAKKMLEETLKWRS----TYRPEE---IRWNEIAVEGETGKLFRAGFRDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKFVYP 697
            + S  C  RYL A  WN   A K L +TL WR     T+  E+   +  +++AVE ETGK    GF D   R +  ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K++  FLD  T  K  F  P
Sbjct:   89 WLSRECFLRYLRANKWNTANAIKGLTKTLVWRREIGLTHGKEDKDPLTADKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLDPATKAKAIFDEP 275          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 74/244 (30.33%), Postives = 118/244 (48.36%), Query Frame = 2
Query:   53 SVAMFRKKNNTQESEEYHHE--------------SKVKELKAAIGPLYGRSLQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTY--------RPEEIRWNEIAVEGETGKLFRAGFRDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW-------SLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKFVYP 697
            S+A+ ++K  T E ++ + E              S+  + +  + PL      + +  C  RYL A  W +      +  TL WR  +          ++I  + +AVE E+GK    G+ +   R +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +         S   PI   +E ++ILQ HYPERL  A L N P +   F K++  F+D  T +K+ F  P
Sbjct:   31 SIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEP 273          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: CSR1_ASHGO (Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii GN=CSR1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 58/206 (28.16%), Postives = 99/206 (48.06%), Query Frame = 2
Query:  119 VKELKAAIGPLYGRSLQYCS--DACLKRYLEARNWNVDKAKKMLEETLKWR-STYRPEEIRWNE-----------IAVEGETGKLFRAGFRDRHGRTVLILRPGMQNTASIDNQ--MRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKF 688
            +KEL  A       S+  C   D  L R++ AR W+++KA  M+  +L+WR +  +PE+I +             I  + E GK    GF D++G  ++ +RP + + A         + +++IE A L L E  +    L D +G+S++ ++     +  I   + HYPE L   F++  P IF   W ++K +LD     K+ F
Sbjct:  116 LKELDGAAVSKEFWSMLRCDYPDNLLLRFVRARKWDINKAMIMMAHSLRWRLNEGKPEDIVFGGERGAQKADKKGIVKQLELGKATVRGF-DKNGCPIVYVRPRLHHAADQTEAETSEYSLFIIEQARLFLKEPCDTATILFDLSGFSMA-NMDYAPVKFLITCFEAHYPECLGKLFIHKAPWIFPPIWNIIKNWLDPVVAAKIAF 319          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: YAS2_SCHPO (CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe GN=SPAC3H8.02 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 54/185 (29.19%), Postives = 83/185 (44.86%), Query Frame = 2
Query:  179 DACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGE-------------TGKLFRAGFRDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKF 688
            D  L R+L AR WNV+ A +M  +T+ WRS     E+   EI    +              GK F  G  D+H R V  +R  +     +  +   R  V+++E A L L    E    + D T +S+S ++     +  I   + HYPE L    ++  P +F+  W ++K +LD     KVKF
Sbjct:  124 DGLLLRFLRARKWNVEAALEMFMKTVHWRS----REMNVGEIVCNADHLDKDDDFVRQLRIGKCFIFG-EDKHNRPVCYIRARLHKVGDVSPESVERLTVWVMETARLILKPPIETATVVFDMTDFSMS-NMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKF 302          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: RETM_AEDAE (Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 59/228 (25.88%), Postives = 101/228 (44.30%), Query Frame = 2
Query:   56 VAMFRKKNNTQESEEYHHESKVKELKAAIGPLYGRSLQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGF--RDRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPE-----GQEQMAW--LIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKF 688
            +  FRKK      EE +HE KV + +                  L R+L AR+++++KA  ML+E+L+WR  +R ++I   E        K F  G+   D+ GR + ILR       G+  +   D  ++  +++ E  +  + E     G+    W  L+D  G S+       +++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F
Sbjct:  233 LVQFRKK-----IEETNHEGKVPDYQT-----------------LLRFLRARDFSIEKAASMLQESLQWREEHRIDDI-LGEYKTPVVVEKYFPGGWHHHDKDGRPLYILRLGNMDVKGLLKSVGEDELLKLTLHICEEGLKLMKEATKLFGKPIWNWCLLVDLDGLSMRHLWRPGVKALLRIIETVEKNYPETMGRVLIVRAPRVFPVLWTIVSAFIDENTRSKFLF 437          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: RETM_ANOGA (Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 50/184 (27.17%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  188 LKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGF--RDRHGRTVLILRPGMQNTASI------DNQMRHLVYLIENAILNLPE-----GQEQMAW--LIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKF 688
            L R+L AR++++DKA  ML+E+L+WR   R + I   E        K F  G+   D+ GR + ILR G  +   +      D  ++  +++ E  +  + E     G+    W  L+D  G S+       +++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F
Sbjct:  258 LLRFLRARDFSIDKATGMLQESLQWRKEQRIDSI-LGEYKTPAVVEKYFPGGWHHHDKDGRPLYILRLGTMDVKGLLKSVGEDELLKLTLHICEEGLRLMKEATKLFGKPVWNWCLLVDLDGLSMRHLWRPGVKALLRIIETVETNYPETMGRVLIVRAPRVFPVLWTIVSTFIDENTRSKFLF 440          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 53/187 (28.34%), Postives = 90/187 (48.13%), Query Frame = 2
Query:  194 RYLEARNWNVDKAKKMLEETLKWRSTYRPEEI--RWNEIAVEGETGKLFRAGFR--DRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMA-----W--LIDFTGWSLST--SVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKFVYP 697
            R+L AR+W+V +A  ML ++L+WR  +R + +   +++ AV  E    F  G+   D+ GR V ILR       G+  +  +D  +R  +++ E  I  + E  E++      W  L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F  P
Sbjct:  249 RFLAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAVVVEH---FPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGP 432          
BLAST of FC932068 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  194 RYLEARNWNVDKAKKMLEETLKWRSTYRPEEI--RWNEIAVEGETGKLFRAGFR--DRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQM-------AWLIDFTGWSLST--SVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAETFQKVKFVYP 697
            R+L AR+W+V +A  ML ++L+WR  +R + +   + E AV  E    F  G+   D+ GR + ILR       G+  +  ++  +R  +++ E  I  + E  E++       + L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F  P
Sbjct:  247 RFLSARDWHVSQAFAMLCDSLQWRKEHRMDSLLEEYTEPAVVVEH---FPGGWHHHDKDGRPIYILRLGHMDVKGLLKSLGMEGLLRLALHICEEGIQKINESAERLDKPVLNWSLLVDLEGLSMRHLWRPGIKALLYIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGP 430          
The following BLAST results are available for this feature:
BLAST of FC932068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
YJX4_SCHPO8.721e-2735.29CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
RSC5_DICDI9.025e-2430.65Random slug protein 5 OS=Dictyostelium discoideum ... [more]
PDR17_YEAST9.978e-2337.77Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
PDR16_YEAST1.702e-2230.33Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
CSR1_ASHGO1.886e-1328.16Phosphatidylinositol transfer protein CSR1 OS=Ashb... [more]
YAS2_SCHPO3.217e-1329.19CRAL-TRIO domain-containing protein C3H8.02 OS=Sch... [more]
RETM_AEDAE1.597e-1225.88Protein real-time OS=Aedes aegypti GN=retm PE=3 SV... [more]
RETM_ANOGA7.924e-1227.17Protein real-time OS=Anopheles gambiae GN=retm PE=... [more]
RETM_DROME1.352e-1128.34Protein real-time OS=Drosophila melanogaster GN=re... [more]
RETM_DROPS2.306e-1127.27Protein real-time OS=Drosophila pseudoobscura pseu... [more]
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Properties
Property NameValue
Genbank descriptionC34204C09EF PostHarveN Citrus clementina cDNA clone C34204C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932068 ID=FC932068; Name=FC932068; organism=Citrus clementina; type=EST; length=720bp
GACGGTGTTTCTATCTCCTTCCCCAGGTTGACTCGATTGCTAAATTGTGG
GATCAGTTGCCATGTTTCGCAAGAAGAATAACACTCAGGAGAGTGAGGAG
TACCATCATGAGTCAAAGGTCAAGGAGCTTAAGGCTGCGATCGGACCACT
TTATGGACGTAGTTTGCAGTATTGCTCTGATGCATGCTTGAAGAGATATC
TGGAGGCTCGAAACTGGAATGTGGACAAAGCAAAGAAAATGTTGGAAGAG
ACACTCAAATGGAGGTCAACCTACAGGCCGGAGGAAATCCGTTGGAATGA
AATTGCAGTTGAAGGTGAGACCGGAAAGTTATTTAGAGCTGGTTTTCGTG
ACCGACATGGCAGGACTGTTCTCATATTGAGACCCGGAATGCAGAACACT
GCATCAATAGACAATCAGATGAGACACCTAGTCTATCTCATAGAGAATGC
TATCCTAAACCTTCCAGAGGGTCAGGAACAAATGGCATGGTTAATAGACT
TCACTGGGTGGTCATTGAGCACCAGCGTCCCTATCAGGTCTGCTCGAGAA
ACTATCAATATATTACAAAATCACTACCCTGAAAGGCTGGCCATAGCATT
TCTCTACAATCCCCCACGGATTTTTGAAGCATTTTGGAAGGTTGTCAAGT
ATTTCTTGGATGCCGAAACATTCCAAAAGGTGAAATTTGTATATCCAAAG
AATAAGACAGCGTGAAAGTC
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