FC932078

Overview
NameFC932078
Unique NameFC932078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15443 contig Ccv1_Contig15443:1..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 5.973e-81
Identity = 153/180 (85.00%), Postives = 156/180 (86.67%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            RMVNHFVQEFKRKNKKDI+GNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY+TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLIP
Sbjct:  242 RMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIP 421          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 7.800e-81
Identity = 154/180 (85.56%), Postives = 155/180 (86.11%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY+TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGG MTVLIP
Sbjct:  242 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGGMTVLIP 421          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 295.049 bits (754), Expect = 1.471e-79
Identity = 150/180 (83.33%), Postives = 155/180 (86.11%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            RMVNHFVQEFKRK+KKDI+GNPRALRRLRT+CERAKRTLSSTAQTTIEIDSLYEGIDFY+TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMT LIP
Sbjct:  242 RMVNHFVQEFKRKSKKDITGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIP 421          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 6.834e-77
Identity = 146/180 (81.11%), Postives = 151/180 (83.89%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            RMVNHFV EFKRKNKKDISGN RALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY TITRARFEE+NMDLFRKCMEPVEKCLRDAK+DKS VH+VVLVGGSTRIPKV QLLQDFFNGKELCKSINPDE           ILSG+G+EKVQD             ETAGGVMTVLIP
Sbjct:  241 RMVNHFVSEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEEMNMDLFRKCMEPVEKCLRDAKIDKSQVHEVVLVGGSTRIPKVHQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGQGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIP 420          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.988e-76
Identity = 146/179 (81.56%), Postives = 151/179 (84.36%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLI 539
            RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL++GIDFY  ITRARFEELN+DLFRKCMEPVEKCLRDAKMDK+S+ DVVLVGGSTRIPKVQQLL DFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLI
Sbjct:  242 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFDGIDFYAPITRARFEELNIDLFRKCMEPVEKCLRDAKMDKNSIDDVVLVGGSTRIPKVQQLLVDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI 420          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.988e-76
Identity = 146/181 (80.66%), Postives = 154/181 (85.08%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQL-LQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            RMVNHFV EFKRK+KKDI+GNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG+DFY+TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQ+ + +FFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLIP
Sbjct:  242 RMVNHFVHEFKRKHKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQVAMTNFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIP 422          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 1.289e-75
Identity = 143/179 (79.89%), Postives = 150/179 (83.80%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLI 539
            RMVNHFVQEFKRKNK+DI+G PRALRRLRTACERAKRTLSSTAQTTIEIDSLY G DFY+ ITRARFEE+NMDLFRKCMEPVEKCLRDAKMDKS+VH++VLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMT LI
Sbjct:  242 RMVNHFVQEFKRKNKQDITGQPRALRRLRTACERAKRTLSSTAQTTIEIDSLYGGADFYSPITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSTVHEIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI 420          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 279.256 bits (713), Expect = 8.353e-75
Identity = 143/180 (79.44%), Postives = 149/180 (82.78%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            RMVNH +QEFKRKNKKDI   P  +RRLRTACERAKRTLSSTAQTTIEIDSLYEG+DFY+ ITRARFEELN+DLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLIP
Sbjct:  242 RMVNHSLQEFKRKNKKDIMETPGHIRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSPITRARFEELNIDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIP 421          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 2.058e-73
Identity = 146/180 (81.11%), Postives = 149/180 (82.78%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL+EGIDF    +RARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQ LQDFFNGKELCKSINPDE           ILSGEGNE+  D             ETAGGVMTVLIP
Sbjct:  240 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFTPRSSRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQ-LQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNER-SDLLLLDVTPLSLGLETAGGVMTVLIP 417          
BLAST of FC932078 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 6.849e-69
Identity = 133/180 (73.89%), Postives = 144/180 (80.00%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIP 542
            R+VNHF  EF+RK KKD+  +PRALRRLRTACERAKRTLSS AQTTIE+DSL+EG+DF T+ITRARFEEL MDLFRKCM+PVEKCL DAKMDK +VHDVVLVGGSTRIPKVQQLLQDFFNGKEL KSINPDE           IL+GEG EKVQD             ETAGGVMTVLIP
Sbjct:  242 RLVNHFANEFQRKYKKDLKTSPRALRRLRTACERAKRTLSSAAQTTIELDSLFEGVDFATSITRARFEELCMDLFRKCMDPVEKCLHDAKMDKMTVHDVVLVGGSTRIPKVQQLLQDFFNGKELNKSINPDEAVAYGAAVQAAILTGEGGEKVQDLLLLDVTPLSLGLETAGGVMTVLIP 421          
The following BLAST results are available for this feature:
BLAST of FC932078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP72_SOLLC5.973e-8185.00Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7C_PETHY7.800e-8185.56Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP71_ARATH1.471e-7983.33Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP70_SOYBN6.834e-7781.11Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP73_ARATH1.988e-7681.56Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP71_SOLLC1.988e-7680.66Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP72_ARATH1.289e-7579.89Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP7E_SPIOL8.353e-7579.44Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP70_MAIZE2.058e-7381.11Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_CHLRE6.849e-6973.89Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionC34204D07EF PostHarveN Citrus clementina cDNA clone C34204D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932078 ID=FC932078; Name=FC932078; organism=Citrus clementina; type=EST; length=544bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACTGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCCTGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGG
TTCTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAG
GACTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGC
GGTTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTA
ATGAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTG
GGTTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAGG
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