FC932081

Overview
NameFC932081
Unique NameFC932081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15445 contig Ccv1_Contig15445:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 1
Query:  277 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            S+    IF+  A+EE+ E AR++SF+GA+AI DLVK+TLGPKG+DKIL S+GR   + VTNDGATILK+  +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP T ISG+R A + AR
Sbjct:    5 SLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAR 138          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.034e-43
Identity = 89/134 (66.42%), Postives = 109/134 (81.34%), Query Frame = 1
Query:  277 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            S+    IF+  A+EE+ E AR++SF+GA+AI DLVK+TLGPKG+DKIL S+GR   + VTNDGATILK+  +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP T I+G+R A + AR
Sbjct:    5 SLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAR 138          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.034e-43
Identity = 89/134 (66.42%), Postives = 109/134 (81.34%), Query Frame = 1
Query:  277 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            S+    IF+  A+EE+ E AR++SF+GA+AI DLVK+TLGPKG+DKIL S+GR   + VTNDGATILK+  +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP T I+G+R A + AR
Sbjct:    5 SLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAR 138          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 89/134 (66.42%), Postives = 108/134 (80.60%), Query Frame = 1
Query:  277 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            S+    IF+  A+EE+ E AR+ SF+GA+AI DLVK+TLGPKG+DKIL S+GR   + VTNDGATILK+  +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP T I+G+R A + AR
Sbjct:    5 SLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAR 138          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 89/134 (66.42%), Postives = 108/134 (80.60%), Query Frame = 1
Query:  277 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            S+    IF+  A+EE+ E AR+ SF+GA+AI DLVK+TLGPKG+DKIL S+GR   + VTNDGATILK+  +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP T I+G+R A + AR
Sbjct:    5 SLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAR 138          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.344e-42
Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 1
Query:  295 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            I    A+EE+GE AR++SFVGA+AI DLVKTTLGPKG+DKIL S     E+ +TNDGATIL   +IDNPAAK+LVDIS+ QDDEVGDGTTSV VLAGELLRE E+LV  K+HP T ISG+R+A E AR
Sbjct:   10 ILNQNASEERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETAR 137          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.155e-40
Identity = 85/133 (63.91%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  277 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECA 675
            S+   +IF +   +E+GE AR++SFVGA+A+ DLVK+TLGPKG+DKILQS   G ++ VTNDGATILKS  +DN AAKVLV+ISKVQDDEVGDGTTSV V A ELLR+AE +V AKIHP   I G+R+A + A
Sbjct:    2 SLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSG-DIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTA 133          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.373e-39
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 1
Query:  292 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLV-AAKIHPMTHISGFRMAAECA 675
            +IF D+  EE+ E AR+++FVGA+A+ DLVK+TLGPKG+DK+LQS        VTNDGATILKS  +DNPAAKVLV+ISKVQDDEVGDGTTSV VL+ ELLREAEKL+  +KIHP T I G+R+A+  A
Sbjct:    4 QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSAS-SNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAA 131          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.623e-38
Identity = 86/131 (65.65%), Postives = 101/131 (77.10%), Query Frame = 1
Query:  292 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTG--RGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            +I +D A EE+GE AR++SFVGA+AI DLVK+TLGPKG+DKIL S        + VTNDGATILKS  +DNPAAKVLVD+S  QD EVGDGTTSV VLA ELL+EAEKLV  +IHP T ISG+R A   A+
Sbjct:    5 QILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQ 135          
BLAST of FC932081 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 63/128 (49.22%), Postives = 88/128 (68.75%), Query Frame = 1
Query:  295 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGVDKILQSTGRGREVTVTNDGATILKSPHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTHISGFRMAAECAR 678
            I  D+A   K   A+  +   A A+AD V++TLGPKG+DK+L S+    +VTVTNDG TIL+   IDNP A+++V++++ Q+DE GDGTT+ V +AGELL+ AE L+   IHP   I G+ +AAE AR
Sbjct:   14 IMGDDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMG--DVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAR 139          
The following BLAST results are available for this feature:
BLAST of FC932081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
TCPB_MOUSE3.537e-4367.16T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_RAT6.034e-4366.42T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_BOVIN6.034e-4366.42T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPB_MACFA7.880e-4366.42T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN7.880e-4366.42T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_DICDI1.344e-4268.75T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPB_SCHPO8.155e-4063.91Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPB_YEAST2.373e-3965.89T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_CAEEL2.623e-3865.65T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
THSB_HALSA4.641e-2749.22Thermosome subunit beta OS=Halobacterium salinariu... [more]

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Properties
Property NameValue
Genbank descriptionC34204D10EF PostHarveN Citrus clementina cDNA clone C34204D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932081 ID=FC932081; Name=FC932081; organism=Citrus clementina; type=EST; length=679bp
GAAACCTACGACAGCTACTCCGGTCTTTTAGTTATTGACGTTTGACTGAC
AAAGTCAATCTTTTGCGCGTGTAACAGAGGTAGATTCTATGGATAAAAAT
ACACACTGCCACACTGAATCAAAAAACAACTGGTAGAAAAGCGAAGCCTA
AAACACAACACTCTTCAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCA
GGGTCGAACATCACCGGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGT
TTTAGTTGCCTTCATTTACATTTTCTTCGATGGGGGTAGAGAGAATTTTT
AGAGATGAAGCTAACGAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATT
TGTTGGTGCAATGGCAATTGCTGACTTGGTTAAGACAACCTTAGGGCCAA
AGGGAGTGGATAAAATTCTACAGTCAACCGGCAGAGGACGTGAAGTCACT
GTTACGAATGACGGGGCCACTATACTTAAGTCCCCACACATTGATAATCC
AGCTGCTAAAGTCCTTGTTGACATCTCTAAGGTTCAGGATGATGAAGTTG
GTGATGGGACAACTTCAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAG
GCAGAGAAGCTGGTGGCTGCTAAGATTCACCCAATGACCCATATATCAGG
TTTCCGGATGGCAGCTGAATGCGCTCGCG
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