FC932089

Overview
NameFC932089
Unique NameFC932089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.069e-57
Identity = 106/235 (45.11%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 YEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y V + +S+I+W SRWD YL M   ++HWFSI+NS++V+FFL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P +P +L  ++G G+Q+  M ++ I  A LG +SP+SRG L+T   FLF+F+G+  G+ A R++RT+KG    W+  A+  A  +PG+VF I  VLN  +WG  S+ A+P      LL +WF IS+PL  LG +FG R +    PV
Sbjct:  253 YSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKG--HRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPV 482          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.069e-57
Identity = 106/235 (45.11%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 YEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y V + +S+I+W SRWD YL M   ++HWFSI+NS++V+FFL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P +P +L  ++G G+Q+  M ++ I  A LG +SP+SRG L+T   FLF+F+G+  G+ A R++RT+KG    W+  A+  A  +PG+VF I  VLN  +WG  S+ A+P      LL +WF IS+PL  LG +FG R +    PV
Sbjct:  252 YSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKG--HRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPV 481          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.069e-57
Identity = 106/235 (45.11%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 YEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y V + +S+I+W SRWD YL M   ++HWFSI+NS++V+FFL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P +P +L  ++G G+Q+  M ++ I  A LG +SP+SRG L+T   FLF+F+G+  G+ A R++RT+KG    W+  A+  A  +PG+VF I  VLN  +WG  S+ A+P      LL +WF IS+PL  LG +FG R +    PV
Sbjct:  253 YSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKG--HRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPV 482          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.069e-57
Identity = 106/235 (45.11%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 YEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y V + +S+I+W SRWD YL M   ++HWFSI+NS++V+FFL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P +P +L  ++G G+Q+  M ++ I  A LG +SP+SRG L+T   FLF+F+G+  G+ A R++RT+KG    W+  A+  A  +PG+VF I  VLN  +WG  S+ A+P      LL +WF IS+PL  LG +FG R +    PV
Sbjct:  252 YSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKG--HRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPV 481          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.069e-57
Identity = 106/235 (45.11%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 YEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y V + +S+I+W SRWD YL M   ++HWFSI+NS++V+FFL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P +P +L  ++G G+Q+  M ++ I  A LG +SP+SRG L+T   FLF+F+G+  G+ A R++RT+KG    W+  A+  A  +PG+VF I  VLN  +WG  S+ A+P      LL +WF IS+PL  LG +FG R +    PV
Sbjct:  252 YSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKG--HRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPV 481          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.280e-54
Identity = 106/237 (44.73%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    1 YEVEFVKS-NIRWPSRWDAYLK-MEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y + F +  NIRW SRWD  L+ M    + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL V +G G QI  M  VT+ FA LGF+SPA+RG L+T  + L++ LG  AGYVA R +++  G  E W++     +   PGIVF    ++N +LWG  S++A+P      +L+LWFCISVPLT +G +FG +     +PV
Sbjct:  271 YSISFEEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG--EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPV 502          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.280e-54
Identity = 106/237 (44.73%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    1 YEVEFVKS-NIRWPSRWDAYLK-MEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y + F +  NIRW SRWD  L+ M    + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL V +G G QI  M  VT+ FA LGF+SPA+RG L+T  + L++ LG  AGYVA R +++  G  E W++     +   PGIVF    ++N +LWG  S++A+P      +L+LWFCISVPLT +G +FG +     +PV
Sbjct:  270 YSISFEEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG--EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPV 501          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.827e-53
Identity = 106/237 (44.73%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    1 YEVEFVKSN-IRWPSRWDAYLK-MEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y V F + + IRW SRWD  L+ M    + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL V +G G QI  M  VT+ FA LGF+SPA+RG L+T  + L++ LG  AGYVA R +++  G  E W++     +   PGIVF    ++N +LWG  S++A+P      +L+LWFCISVPLT +G +FG +     +PV
Sbjct:  271 YSVSFEEDDKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG--EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPV 502          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.387e-53
Identity = 106/237 (44.73%), Postives = 148/237 (62.45%), Query Frame = 1
Query:    1 YEVEFVKSN-IRWPSRWDAYLK-MEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            Y V F +   IRW SRWD  L+ M    + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL V +G G QI  M  VT+ FA LGF+SPA+RG L+T  + L++ LG  AGYVA R +++  G  E W++     +   PGIVF    ++N +LWG  S++A+P      +L+LWFCISVPLT +G +FG +     +PV
Sbjct:  271 YSVSFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG--EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPV 502          
BLAST of FC932089 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.878e-52
Identity = 100/235 (42.55%), Postives = 144/235 (61.28%), Query Frame = 1
Query:    1 YEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTSALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEENTYPV 705
            YEV++  S + W  RWD Y +     VHWFSILNSLM++F L  +V +I +RT+++D+ RY  +D        EE +GWK++ GDVFR P HP LL V +G GVQI  M ++T+IFA LGF+SPA+ G L T +I LF+   + AGY + R++   KG    W+      A   PGI+F I   +N  L G+KS++A+P   +  ++++WF ISVPL  LG +F ++      PV
Sbjct:  250 YEVKYTPSPVLWNKRWDIYFESNDNSVHWFSILNSLMIVFILTVMVAMIIIRTLKKDIRRYTSIDTSEDRDSQEE-TGWKMIHGDVFRPPSHPMLLSVCIGSGVQIFSMTLITMIFAVLGFLSPANIGGLATALIVLFVLSAMFAGYFSTRVFTIFKG--RNWKKNTIYTALSMPGIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGISVPLVFLGSYFASKKPVPEDPV 481          
The following BLAST results are available for this feature:
BLAST of FC932089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TM9S4_RAT6.069e-5745.11Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB6.069e-5745.11Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE6.069e-5745.11Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN6.069e-5745.11Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN6.069e-5745.11Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
TM9S2_RAT6.280e-5444.73Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_MOUSE6.280e-5444.73Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN1.827e-5344.73Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S2_PONAB2.387e-5344.73Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
PHG1A_DICDI5.878e-5242.55Putative phagocytic receptor 1a OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC34204E06EF PostHarveN Citrus clementina cDNA clone C34204E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932089 ID=FC932089; Name=FC932089; organism=Citrus clementina; type=EST; length=707bp
TATGAGGTTGAATTCGTGAAGAGCAATATAAGATGGCCTTCTCGATGGGA
TGCTTATTTGAAGATGGAAGGTGCTCGTGTACACTGGTTCTCAATCCTCA
ATTCTCTGATGGTGATATTTTTCCTTGCCGGTATAGTTTTTGTCATTTTC
TTGAGGACTGTGAGGAGGGATTTGACAAGGTATGAGGAGTTGGACAAAGA
AGCTCAAGCACAGATGAATGAGGAGCTTTCTGGGTGGAAGCTTGTTGTGG
GTGATGTGTTTAGAGAACCAGATCATCCAAAGCTTCTTTGTGTGATGGTT
GGAGATGGTGTTCAGATTACAGGGATGGCAATTGTCACTATCATATTTGC
AGCCTTGGGTTTCATGTCACCTGCTTCACGTGGAATGTTACTGACAGGAA
TGATATTTCTTTTTCTTTTCTTGGGTATTGCTGCTGGTTATGTTGCTGTA
CGAATGTGGAGAACAATCAAGGGAACTTCTGAAGGGTGGAGATCAGTTGC
CTGGTCTGCTGCATGCTTCTTCCCTGGAATTGTCTTTGTTATCCTAACAG
TATTAAATTTCGTTCTTTGGGGCAGTAAGAGTACCAGTGCTCTTCCCATT
TCCTTATATTTTGTGCTCTTGTCCCTCTGGTTCTGCATTTCTGTGCCACT
TACTCTCTTGGGTGGATTCTTTGGGACACGAGCTGAGGAAAATACATATC
CTGTGCG
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