FC932092

Overview
NameFC932092
Unique NameFC932092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig724 contig Ccv1_Contig724:107..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  212 CLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            C+ RYL A  W+V  AKK + +TL WR  +    +  +EI  E  TGK    G+ D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K++  F+D
Sbjct:  637 CILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFID 794          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 67/176 (38.07%), Postives = 94/176 (53.41%), Query Frame = 2
Query:  197 YCSDACLKRYLEARNWNVDKAKKMLEETLKWRS----TYRPEE---IRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            + S  C  RYL A  WN   A K L +TL WR     T+  E+   +  +++AVE ETGK    GF D   R +  ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K++  FLD
Sbjct:   89 WLSRECFLRYLRANKWNTANAIKGLTKTLVWRREIGLTHGKEDKDPLTADKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLD 263          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  173 PLYGRSLQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTY--------RPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW-------SLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            PL      + +  C  RYL A  W +      +  TL WR  +          ++I  + +AVE E+GK    G+ +   R +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +         S   PI   +E ++ILQ HYPERL  A L N P +   F K++  F+D
Sbjct:   76 PLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFID 261          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 55/186 (29.57%), Postives = 107/186 (57.53%), Query Frame = 2
Query:  149 KELKAAIGPLYGRS-LQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIR-WNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAI--LNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            KE+K+    L   + + +C+D C  RYL ARN+ V K++KML +TL+WR  +RP++I+   +I   G  G ++     D+ GR ++   P      ++ +++  ++LVY +E     ++ P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK++  FL+
Sbjct:   53 KEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVY-VNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLN 236          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: CSR1_ASHGO (Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii GN=CSR1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 56/197 (28.43%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  146 VKELKAAIGPLYGRSLQYCS--DACLKRYLEARNWNVDKAKKMLEETLKWR-STYRPEEIRWNE-----------IAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQ--MRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            +KEL  A       S+  C   D  L R++ AR W+++KA  M+  +L+WR +  +PE+I +             I  + E GK    GF D++G  ++ +RP + + A         + +++IE A L L E  +    L D +G+S++ ++     +  I   + HYPE L   F++  P IF   W ++K +LD
Sbjct:  116 LKELDGAAVSKEFWSMLRCDYPDNLLLRFVRARKWDINKAMIMMAHSLRWRLNEGKPEDIVFGGERGAQKADKKGIVKQLELGKATVRGF-DKNGCPIVYVRPRLHHAADQTEAETSEYSLFIIEQARLFLKEPCDTATILFDLSGFSMA-NMDYAPVKFLITCFEAHYPECLGKLFIHKAPWIFPPIWNIIKNWLD 310          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: RETM_ANOGA (Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 48/175 (27.43%), Postives = 83/175 (47.43%), Query Frame = 2
Query:  215 LKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGF--HDRHGRTVLILRPGMQNTASI------DNQMRHLVYLIENAILNLPE-----GQEQMAW--LIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            L R+L AR++++DKA  ML+E+L+WR   R + I   E        K F  G+  HD+ GR + ILR G  +   +      D  ++  +++ E  +  + E     G+    W  L+D  G S+       +++    I  ++ +YPE +    +   PR+F   W +V  F+D
Sbjct:  258 LLRFLRARDFSIDKATGMLQESLQWRKEQRIDSI-LGEYKTPAVVEKYFPGGWHHHDKDGRPLYILRLGTMDVKGLLKSVGEDELLKLTLHICEEGLRLMKEATKLFGKPVWNWCLLVDLDGLSMRHLWRPGVKALLRIIETVETNYPETMGRVLIVRAPRVFPVLWTIVSTFID 431          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: RETM_AEDAE (Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 47/175 (26.86%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  215 LKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGF--HDRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPE-----GQEQMAW--LIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            L R+L AR+++++KA  ML+E+L+WR  +R ++I   E        K F  G+  HD+ GR + ILR       G+  +   D  ++  +++ E  +  + E     G+    W  L+D  G S+       +++    I  ++ +YPE +    +   PR+F   W +V  F+D
Sbjct:  255 LLRFLRARDFSIEKAASMLQESLQWREEHRIDDI-LGEYKTPVVVEKYFPGGWHHHDKDGRPLYILRLGNMDVKGLLKSVGEDELLKLTLHICEEGLKLMKEATKLFGKPIWNWCLLVDLDGLSMRHLWRPGVKALLRIIETVEKNYPETMGRVLIVRAPRVFPVLWTIVSAFID 428          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: YAS2_SCHPO (CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe GN=SPAC3H8.02 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  206 DACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGE-------------TGKLFRAGFHDRHGRTVLILRPGMQNTASI--DNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            D  L R+L AR WNV+ A +M  +T+ WRS     E+   EI    +              GK F  G  D+H R V  +R  +     +  ++  R  V+++E A L L    E    + D T +S+S ++     +  I   + HYPE L    ++  P +F+  W ++K +LD
Sbjct:  124 DGLLLRFLRARKWNVEAALEMFMKTVHWRS----REMNVGEIVCNADHLDKDDDFVRQLRIGKCFIFG-EDKHNRPVCYIRARLHKVGDVSPESVERLTVWVMETARLILKPPIETATVVFDMTDFSMS-NMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLD 293          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 49/175 (28.00%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  221 RYLEARNWNVDKAKKMLEETLKWRSTYRPEEI--RWNEIAVEGETGKLFRAGFH--DRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQM-------AWLIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            R+L AR+W+V +A  ML ++L+WR  +R + +   +++ AV  E    F  G+H  D+ GR V ILR       G+  +  +D  +R  +++ E  I  + E  E++       + L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D
Sbjct:  249 RFLAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAVVVEH---FPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFID 420          
BLAST of FC932092 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 48/175 (27.43%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  221 RYLEARNWNVDKAKKMLEETLKWRSTYRPEEI--RWNEIAVEGETGKLFRAGF--HDRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQM-------AWLIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLD 688
            R+L AR+W+V +A  ML ++L+WR  +R + +   + E AV  E    F  G+  HD+ GR + ILR       G+  +  ++  +R  +++ E  I  + E  E++       + L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D
Sbjct:  247 RFLSARDWHVSQAFAMLCDSLQWRKEHRMDSLLEEYTEPAVVVEH---FPGGWHHHDKDGRPIYILRLGHMDVKGLLKSLGMEGLLRLALHICEEGIQKINESAERLDKPVLNWSLLVDLEGLSMRHLWRPGIKALLYIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFID 418          
The following BLAST results are available for this feature:
BLAST of FC932092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
YJX4_SCHPO6.606e-2439.62CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR17_YEAST1.055e-2138.07Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
PDR16_YEAST5.234e-2133.69Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
RSC5_DICDI1.989e-2029.57Random slug protein 5 OS=Dictyostelium discoideum ... [more]
CSR1_ASHGO1.169e-1228.43Phosphatidylinositol transfer protein CSR1 OS=Ashb... [more]
RETM_ANOGA9.894e-1227.43Protein real-time OS=Anopheles gambiae GN=retm PE=... [more]
RETM_AEDAE1.688e-1126.86Protein real-time OS=Aedes aegypti GN=retm PE=3 SV... [more]
YAS2_SCHPO2.204e-1128.41CRAL-TRIO domain-containing protein C3H8.02 OS=Sch... [more]
RETM_DROME3.760e-1128.00Protein real-time OS=Drosophila melanogaster GN=re... [more]
RETM_DROPS6.413e-1127.43Protein real-time OS=Drosophila pseudoobscura pseu... [more]
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Properties
Property NameValue
Genbank descriptionC34204E10EF PostHarveN Citrus clementina cDNA clone C34204E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932092 ID=FC932092; Name=FC932092; organism=Citrus clementina; type=EST; length=697bp
AAATCAGATTCATAGACAAAGCATTACCACGGTGTTTCTATCTCCTTCCC
CAGGTTGACTCGATTGCTAAATTGTGGGATCAGTTGCCATGTTTCGCAAG
AAGAATAACACTCAGGAGAGTGAGGAGCACCATCATGAGTCAAAGGTCAA
GGAGCTTAAGGCTGCGATCGGACCACTTTATGGACGTAGTTTGCAGTATT
GCTCTGATGCATGCTTGAAGAGATATCTGGAGGCTCGAAACTGGAATGTG
GACAAAGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGTCAACCTA
CAGGCCGGAGGAAATCCGTTGGAATGAAATTGCAGTTGAAGGTGAGACCG
GAAAGTTATTTAGAGCTGGTTTTCATGACCGACATGGCAGGACTGTTCTC
ATATTGAGACCCGGAATGCAGAACACTGCATCAATAGACAATCAGATGAG
ACACCTAGTCTATCTCATAGAGAATGCTATCCTAAACCTTCCAGAGGGTC
AGGAACAAATGGCATGGTTAATAGACTTCACTGGGTGGTCATTGAGCACC
AGCGTCCCTATCAGGTCTGCTCGAGAAACTATCAATATATTACAAAATCA
CTACCCTGAAAGGCTGGCCATAGCATTTCTCTACAATCCCCCACGGATTT
TTGAAGCATTTTGGAAGGTTGTCAAGTATTTCTTGGATGCCAAACAT
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