FC932096

Overview
NameFC932096
Unique NameFC932096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932096 vs. ExPASy Swiss-Prot
Match: MBTP1_RAT (Membrane-bound transcription factor site-1 protease OS=Rattus norvegicus GN=Mbtps1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 3
Query:    3 DNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSLNGEQSRYASGTDIVRFPGGGNVHSFPFLDTTESGATQNVLTSSTTKADS-PILGLLEV---GEGRIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSANIRDSVLFSDSSKHDTP 455
            +NTR WW P TGGAN+PALN+LL+ + + F D +  G+F+L      YASG  I RFP  G V +  F D         VL   T   D+ PILGL ++   G GRI +YGDSNCLD SH   +C+WLL  +L +TS  +    L    ++   P
Sbjct:  740 ENTRQWWMPDTGGANVPALNELLSVWNMGFSDGLYEGEFALANHDMYYASGCSIARFPEDGVVITQTFKD-----QGLEVLKQETAVVDNVPILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPP 889          
BLAST of FC932096 vs. ExPASy Swiss-Prot
Match: MBTP1_HUMAN (Membrane-bound transcription factor site-1 protease OS=Homo sapiens GN=MBTPS1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.069e-27
Identity = 72/179 (40.22%), Postives = 95/179 (53.07%), Query Frame = 3
Query:    3 DNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSLNGEQSRYASGTDIVRFPGGGNVHSFPFLDTTESGATQNVLTSSTTKADS-PILGLLEV---GEGRIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSANIRDSVLFSDSSKHDTPLVEDDNQLPSRRTDVNFSSYSAVV 527
            +NTR WW P TGGANIPALN+LL+ + + F D +  G+F+L      YASG  I +FP  G V +  F D         VL   T   ++ PILGL ++   G GRI +YGDSNCLD SH   +C+WLL  +L +TS  +    L S S     P     +  P R    +   YS V+
Sbjct:  740 ENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKD-----QGLEVLKQETAVVENVPILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSL-SHSGNRQRPPSGAGSVTPERMEGNHLHRYSKVL 912          
BLAST of FC932096 vs. ExPASy Swiss-Prot
Match: MBTP1_CRIGR (Membrane-bound transcription factor site-1 protease OS=Cricetulus griseus GN=MBTPS1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 3
Query:    3 DNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSLNGEQSRYASGTDIVRFPGGGNVHSFPFLDTTESGATQNVLTSSTTKADS-PILGLLEV---GEGRIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSANIRDSVLFSDSSKHDTP 455
            +NTR WW P TGGANIPALN+LL+ + + F D +  G+F+L      YASG  I +FP  G V +  F D         VL   T   ++ PILGL ++   G GRI +YGDSNCLD SH   +C+WLL  +L +TS  +    L    ++   P
Sbjct:  740 ENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFALANHDMYYASGCSIAKFPEDGVVITQTFKD-----QGLEVLKQETAVVENVPILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVNPPSLSHSGNRQRPP 889          
BLAST of FC932096 vs. ExPASy Swiss-Prot
Match: MBTP1_MOUSE (Membrane-bound transcription factor site-1 protease OS=Mus musculus GN=Mbtps1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 65/155 (41.94%), Postives = 86/155 (55.48%), Query Frame = 3
Query:    3 DNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSLNGEQSRYASGTDIVRFPGGGNVHSFPFLDTTESGATQNVLTSSTTKADS-PILGLLEV---GEGRIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSANIRDSVLFSDSSKHDTP 455
            +NTR WW P TGGANIPALN+LL+ + + F D +  G+F L      YASG  I +FP  G V +  F D         VL   T   ++ PILGL ++   G GRI +YGDSNCLD SH   +C+WLL  +L +TS  +    L    ++   P
Sbjct:  740 ENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFVLANHDMYYASGCSIAKFPEDGVVITQTFKD-----QGLEVLKQETAVVENVPILGLYQIPSEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPP 889          
The following BLAST results are available for this feature:
BLAST of FC932096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MBTP1_RAT2.350e-2742.58Membrane-bound transcription factor site-1 proteas... [more]
MBTP1_HUMAN3.069e-2740.22Membrane-bound transcription factor site-1 proteas... [more]
MBTP1_CRIGR8.930e-2741.94Membrane-bound transcription factor site-1 proteas... [more]
MBTP1_MOUSE2.598e-2641.94Membrane-bound transcription factor site-1 proteas... [more]
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Properties
Property NameValue
Genbank descriptionC34204F02EF PostHarveN Citrus clementina cDNA clone C34204F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932096 ID=FC932096; Name=FC932096; organism=Citrus clementina; type=EST; length=730bp
ATGATAACACTCGAAGCTGGTGGACTCCAGTCACTGGAGGTGCAAACATT
CCAGCATTGAATGATCTTCTGGCCCCATTTGGGATTGCTTTTGGAGACAA
GATTCTGAATGGTGATTTTTCTCTCAATGGTGAGCAGAGTCGATATGCAT
CTGGAACAGATATTGTAAGGTTTCCAGGAGGTGGGAATGTACATAGCTTT
CCTTTCCTGGATACCACGGAGAGTGGGGCAACCCAAAATGTGCTGACTTC
CAGCACAACCAAGGCTGACTCCCCCATTCTTGGTCTTCTAGAGGTGGGTG
AAGGTCGCATTGCAGTATACGGCGATTCCAATTGTTTGGATAGCAGCCAT
ATGGTTACTAACTGTTATTGGCTCCTAAGGAAGATATTAGATTTCACCAG
TGCAAACATTAGGGATTCAGTACTTTTTTCAGATTCTAGTAAGCATGATA
CACCCTTGGTCGAAGATGACAACCAGTTGCCATCTCGTAGAACTGATGTA
AATTTCTCTTCATATTCTGCTGTTGTGGGCAAGGATTTGGCCTGTAGAAG
TGACTCTAGATTTGAGGTTTGGGGAACAAAGGGATACAATTTAGATGTAA
GGGAAGGGGATAAAAGAAAACCAGGCTATCCTGTTTTTCATGTGGGTGGA
GGTTTCAATTCACCATGGGACATTTCAAATCAGACGTCCCAGTACACTCA
GATAAATAGAGTGATTATTTGGGAAGCAGT
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