FC932109

Overview
NameFC932109
Unique NameFC932109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig597 contig Ccv1_Contig597:353..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932109 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.311e-73
Identity = 148/237 (62.45%), Postives = 167/237 (70.46%), Query Frame = 2
Query:   44 KMLGYETVR----SKDDGKFEVDLEGGDGER-LYPGLSYGENQLRWGFIRKVYGILTAQIVLATLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDXLIKRFTYDDYILASVTLYL 739
            K  GY +V      +  GK ++DLE G GE  LYPGLSYGENQLRWGFIRKVYGIL+AQ++L TL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDFSFLGP              +QMFFPLG TS AVYGG SALVFCGYIVYDTD LIKRFTYD+YILASV LYL
Sbjct:    3 KPYGYASVSMSGIDRSAGK-DIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYL 238          
BLAST of FC932109 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 58/194 (29.90%), Postives = 98/194 (50.52%), Query Frame = 2
Query:  158 LRWGFIRKVYGILTAQIVLATLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDXLIKRFTYDDYILASVTLYL 739
            +R  F+RKVY IL+ Q++L T+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT  + +   DF+  G               +++FF    T   V   + AL+FCG+I+YDT  L+ R + ++Y++A+++LY+
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEYVIAAISLYM 219          
BLAST of FC932109 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 2
Query:  158 LRWGFIRKVYGILTAQIVLATLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDXLIKRFTYDDYILASVTLYL 739
            +R  F+RKVY IL+ Q++L T+ S++ + +  +                          +   K+P+NL +L  FT+  +L VAV     D  I+L+A ILT+ V   LT YT  + K   DFS  G               ++ FF        V     AL+FCG+I+YDT  L+ + + ++Y+LA+++LYL
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALTLNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQSKK---DFSKFGAGLFALLWILCLSGFLKFFF-YSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEYVLAAISLYL 219          
BLAST of FC932109 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 56/194 (28.87%), Postives = 87/194 (44.85%), Query Frame = 2
Query:  158 LRWGFIRKVYGILTAQIVLATLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDXLIKRFTYDDYILASVTLYL 739
            +R  F+RKVY ILTAQ+ + +L   I  L+   +                         +    +P N I L LFT    L +  +      RI+LEA+ +T  V  +LT +TF +     DFS LG               +  F P        + G   LVFCGYI++DT  ++ R++ +++I++S+ LYL
Sbjct:   54 IRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYL 244          
BLAST of FC932109 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 54/210 (25.71%), Postives = 88/210 (41.90%), Query Frame = 2
Query:  113 DGERLYPG-LSYGENQLRWGFIRKVYGILTAQIVLATLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDXLIKRFTYDDYILASVTLYL 739
            D + + PG +      +R  F+RKV GI+  Q++    + +        N                        HVY ++ P+N ++L  FT   ++ +       + ++VLEA ++T  VV SL  YT    +  +DFS                   QMFF +      V     A +FC  +V D D ++ RF+ +DYI A V+LY+
Sbjct:   53 DADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIALHVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFF-MSPAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSLYM 258          
The following BLAST results are available for this feature:
BLAST of FC932109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH1.311e-7362.45BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE9.862e-2129.90Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_HUMAN1.575e-1830.41Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO9.552e-1628.87Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_CAEEL8.368e-1225.71Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionC34204G03EF PostHarveN Citrus clementina cDNA clone C34204G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932109 ID=FC932109; Name=FC932109; organism=Citrus clementina; type=EST; length=739bp
GATAAAAAAAAATCACGAAAATTCAAAAATCAAAATCGCTTGAAAGATGT
TGGGCTACGAGACGGTGAGGAGCAAAGATGACGGCAAATTCGAGGTAGAT
CTGGAAGGCGGAGATGGGGAGAGGCTTTACCCCGGTCTCAGCTACGGCGA
GAACCAGCTCCGATGGGGTTTCATTCGCAAGGTGTACGGCATCTTGACGG
CCCAGATCGTTTTGGCCACCTTGGTCTCCTCAATCACCGTTCTTTACAAT
CCCATCAACGATCTTCTCAGGGGCAATTCTGGCCTTCTCCTCTTCCTCTC
CATCCCCCCCTTCATCCTGTTATGGCCACTGCATGTGTATCATCAGAAGC
ACCCTGTGAACTTGATTGTCCTTGGTCTCTTCACTGTATCTCTGAGTCTT
CCTGTTGCTGTAAGCTGTGCTAATACCGATGGTAGGATTGTGCTTGAAGC
ATTAATTCTGACCTCGGCTGTGGTTTGTTCTTTAACTGGGTACACTTTCT
GGGCCTCTAAGAAGGGCAAAGACTTCAGCTTTCTTGGACCAATTCTATTC
ACCAGCCTCATAATCCTCATTCTGACTAGCTTTATGCAGATGTTCTTTCC
TCTGGGATCTACATCCACTGCTGTTTATGGTGGAATTAGTGCACTGGTCT
TCTGTGGATACATCGTTTACGACACCGACNACTTGATCAAGCGCTTCACA
TATGATGATTATATCTTGGCCTCTGTCACTCTCTATCTG
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