FC932110

Overview
NameFC932110
Unique NameFC932110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932110_ssr546 microsatellite FC932110_ssr546:546..561. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_MACFA (Lactoylglutathione lyase OS=Macaca fascicularis GN=GLO1 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 56/157 (35.67%), Postives = 79/157 (50.32%), Query Frame = -2
Query:   46 PQEAGLFN-AAPSLNPPPTPATKEYRLNHLALRIQDPARSLHFYINLLGMRIIFTMN--AGPFTIYYLGHPPAD--AKTEEDVAAWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQRLREGGVRILK 501
            P   GL + AA S      P+TK++ L    LR++DP +SL FY  +LGM +I   +  A  F++Y+L +   +   K +E+  AWA S             LEL H  GTE+         GN  P  GF H+G  VPDV +A +R  E GV+ +K
Sbjct:    6 PPSGGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPAMKFSLYFLAYEDKNDIPKDKEEKIAWALS---------RKATLELTHNWGTEDDETQS-YHNGNSDPR-GFGHIGIAVPDVHSACKRFEELGVKFVK 151          
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_RAT (Lactoylglutathione lyase OS=Rattus norvegicus GN=Glo1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -2
Query:   46 PQEAGLFN-AAPSLNPPPTPATKEYRLNHLALRIQDPARSLHFYINLLGMRIIFTMN--AGPFTIYYLGHPPAD--AKTEEDVAAWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQRLREGGVRILK 501
            P  +GL + AA S    P P+TK++ L    LRI+DP +SL FY  +LG+ ++  ++  +  F++Y+L +   +   K + +  AWA S             LEL H  GTE+         GN  P  GF H+G  VPDV  A +R  E GV+ +K
Sbjct:    6 PASSGLTDEAALSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPSMKFSLYFLAYEDKNDIPKDKTERTAWAFS---------RKATLELTHNWGTEDDETQS-YHNGNSDPR-GFGHIGIAVPDVYEACKRFEELGVKFVK 151          
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_PSEAE (Lactoylglutathione lyase OS=Pseudomonas aeruginosa GN=gloA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 51/148 (34.46%), Postives = 72/148 (48.65%), Query Frame = -2
Query:   46 PSLNPPPTPATKEYRLNHLALRIQDPARSLHFYINLLGMRII--FTMNAGPFTIYYL----GHPPADAKTEEDVAAWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQRLREGGVRILK 471
            P +   P   T+EY  NH  LR++DP RSL FY  +LGMR++       G F++Y+L    G    DA  E     + + +           +LEL H  G+E+   D     GN  P  GF H+ F+VPD+ AA +R    GV  +K
Sbjct:    9 PGICMEPDAITQEYVFNHTMLRVKDPKRSLDFYSRVLGMRLLRRLDFEEGRFSLYFLAMTRGEEVPDAVDERQRYTFGRQS-----------VLELTHNWGSESD--DSQYHNGNQDPR-GFGHICFSVPDLVAACERFETLGVNFVK 142          
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_MOUSE (Lactoylglutathione lyase OS=Mus musculus GN=Glo1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = -2
Query:   46 PQEAGLFN-AAPSLNPPPTPATKEYRLNHLALRIQDPARSLHFYINLLGMRIIFTMN--AGPFTIYYLGHPPAD--AKTEEDVAAWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQRLREGGVRILK 501
            P  +GL +  A S    P P+TK++ L    LRI+DP +SL FY  +LG+ ++  ++  A  F++Y+L +   +   K + +  AW  S             LEL H  GTE+         GN  P  GF H+G  VPDV +A +R  E GV+ +K
Sbjct:    6 PASSGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFS---------RKATLELTHNWGTEDDETQS-YHNGNSDPR-GFGHIGIAVPDVYSACKRFEELGVKFVK 151          
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_HUMAN (Lactoylglutathione lyase OS=Homo sapiens GN=GLO1 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = -2
Query:   46 PQEAGLFN-AAPSLNPPPTPATKEYRLNHLALRIQDPARSLHFYINLLGMRIIFTMN--AGPFTIYYLGHPPAD--AKTEEDVAAWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQRLREGGVRILK 501
            P   GL + AA S      P+TK++ L    LR++DP +SL FY  +LGM +I   +     F++Y+L +   +   K +++  AWA S             LEL H  GTE+         GN  P  GF H+G  VPDV +A +R  E GV+ +K
Sbjct:    6 PPSGGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALS---------RKATLELTHNWGTEDDETQS-YHNGNSDPR-GFGHIGIAVPDVYSACKRFEELGVKFVK 151          
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_YEAST (Lactoylglutathione lyase OS=Saccharomyces cerevisiae GN=GLO1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 43/129 (33.33%), Postives = 64/129 (49.61%), Query Frame = -2
Query:   46 LNHLALRIQDPARSLHFYINLLGMRIIF--TMNAGPFTIYYLGHPPADAKTEEDVAAWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQRLREGGVRILK 426
            LNH  LR++DPAR++ FY    GM+++         F++Y+L  P  D           K+ +  P +    G+LEL H  GTE +  D  +  GN  PH GF H+ F+V D+    + L   GV+  K
Sbjct:   23 LNHTCLRVKDPARTVKFYTEHFGMKLLSRKDFEEAKFSLYFLSFPKDDI---------PKNKNGEPDVFSAHGVLELTHNWGTEKN-PDYKINNGNEEPHRGFGHICFSVSDINKTCEELESQGVKFKK 141          
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_PSEPU (Lactoylglutathione lyase OS=Pseudomonas putida GN=gloA PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 49/139 (35.25%), Postives = 69/139 (49.64%), Query Frame = -2
Query:   76 NAAPSLNPPPTPATKEYRLNHLALRIQDPARSLHFYINLLGMRIIFTMN--AGPFTIYYLG-HPPADAKTEEDVA-AWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQR 480
            N  P +     PAT ++  NH  LR++D  +SL FY  +LG +++   +     F++Y+L    PA    ++D    W KS           G+LEL H HGTE   AD     GN  P  GF H+  +VPDV AA +R
Sbjct:    7 NTLPGVTAQADPATAQFVFNHTMLRVKDIEKSLDFYTRVLGFKLVDKRDFVEAKFSLYFLALVDPATIPADDDARHQWMKS---------IPGVLELTHNHGTERD-ADFAYHHGNTDPR-GFGHICVSVPDVVAACER 134          
BLAST of FC932110 vs. ExPASy Swiss-Prot
Match: LGUL_SOLLC (Lactoylglutathione lyase OS=Solanum lycopersicum GN=GLX1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 48/144 (33.33%), Postives = 68/144 (47.22%), Query Frame = -2
Query:   46 PSLNPPPTPATKEYRLNHLALRIQDPARSLHFYINLLGMRIIFTMN--AGPFTIYYLGHPPADAKTEEDVAAWAKSTSEMPVMTRTSGLLELYHVHGTENSGADGVVCTGNVAPHLGFAHLGFTVPDVEAAVQRLREGGVRILK 471
            P L+  P  ATK Y L     RI+DP  SL FY  +LGM ++  ++     F++Y++G+    +   + V   A + S+          LEL H  GTE+         GN  P  GF H+G TV DV  A +R    GV  +K
Sbjct:   13 PGLHATPDEATKGYFLQQTMFRIKDPKVSLEFYSKVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPSDPVERTAWTFSQ-------KSTLELTHNWGTESDPNFTGYHNGNSEPR-GFGHIGVTVDDVYKACERFESLGVEFVK 148          
The following BLAST results are available for this feature:
BLAST of FC932110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
LGUL_MACFA9.594e-1435.67Lactoylglutathione lyase OS=Macaca fascicularis GN... [more]
LGUL_RAT4.761e-1334.39Lactoylglutathione lyase OS=Rattus norvegicus GN=G... [more]
LGUL_PSEAE8.122e-1334.46Lactoylglutathione lyase OS=Pseudomonas aeruginosa... [more]
LGUL_MOUSE8.122e-1333.76Lactoylglutathione lyase OS=Mus musculus GN=Glo1 P... [more]
LGUL_HUMAN1.385e-1234.39Lactoylglutathione lyase OS=Homo sapiens GN=GLO1 P... [more]
LGUL_YEAST1.809e-1233.33Lactoylglutathione lyase OS=Saccharomyces cerevisi... [more]
LGUL_PSEPU4.031e-1235.25Lactoylglutathione lyase OS=Pseudomonas putida GN=... [more]
LGUL_SOLLC3.412e-1133.33Lactoylglutathione lyase OS=Solanum lycopersicum G... [more]
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Properties
Property NameValue
Genbank descriptionC34204G04EF PostHarveN Citrus clementina cDNA clone C34204G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932110 ID=FC932110; Name=FC932110; organism=Citrus clementina; type=EST; length=664bp
GGACCCCGAAAGCGGCACCGTCTCCCTCGAACAAACCCCCACATCCTTCA
GAATCCTAACCCCTCCCTCCCGCAGCCTCTGCACAGCAGCCTCCACATCC
GGAACCGTGAACCCCAGATGCGCAAACCCAAGATGCGGGGCTACATTCCC
CGTACAAACAACACCATCTGCACCACTGTTCTCCGTGCCATGCACATGAT
ACAACTCCAGCAGTCCGCTCGTCCTCGTCATAACGGGCATTTCGCTTGTG
CTCTTCGCCCACGCGGCAACATCTTCTTCGGTCTTTGCATCTGCTGGCGG
GTGTCCGAGGTAGTAGATCGTAAAGGGGCCGGCGTTCATGGTGAAGATTA
TTCGCATGCCTAGGAGGTTGATGTAGAAGTGCAGTGAGCGGGCTGGGTCT
TGGATGCGTAAGGCTAGGTGGTTTAGTCTGTATTCTTTTGTTGCTGGTGT
TGGGGGTGGGTTTAGGCTTGGGGCTGCGTTGAAGAGGCCTGCTTCTTGGG
GGAGGTGGAATTTGCTGTCAAGGGACATTGCGTATGTTTGTTATAGATGG
ATGGATGGATGGGTATGGCGGGACTGGATCAATTGGGAGATAAAGAGGAA
ATATGCATTGATCGGGAGAGGGTTGATAGAATGAGGGGCTGCTCTTCTAT
TCGTACCGCGGATC
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