FC932112
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3) HSP 1 Score: 187.193 bits (474), Expect = 7.466e-47 Identity = 95/168 (56.55%), Postives = 126/168 (75.00%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQL-----AEQVQGQGSQSIK 489 QL +VACLSLAAKVEETQVPLLLD QVE+ K+VFEAKTIQRME+L+LSTL+WKM+ +TP+SF+D+I+R LGLK W+FL +C R+LLS ISDS F+ YLPSV+A ATM+ +++ ++ + Y+ LL +L K+KV+ C LI+QL Q+Q Q S+ K Sbjct: 133 QLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVDRIGLQIQIQSSKKRK 300
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.104e-41 Identity = 80/149 (53.69%), Postives = 116/149 (77.85%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQ 447 QL AVA LSLAAKVEE QVPLLLDLQVE+ +++FEAKTIQRME+L+LSTLQW+M+PVTP+SF D+I+R G K + +F ++C+R+L+S I+D+ FM+Y PSV+A A M+ V + ++ VEY+ Q+ +L +++KV C +L+++ Sbjct: 142 QLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYELLLE 290
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40 Identity = 79/148 (53.38%), Postives = 109/148 (73.65%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIM 444 QL A+ACLSLAAKVEE +VP LLD QVE+ ++VFEAKTIQRME+LVLSTL W+M+PVTP+SF D+I+R K + EFL RC+ +LLS I DS F+ + PSV+A A M+ V+++++ Y+ QL+ +L D +KV C +L++ Sbjct: 132 QLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVL 279
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29 Identity = 72/182 (39.56%), Postives = 115/182 (63.19%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQGSQSIKRKFGSITVPVVPGSPNGVM 546 QL AV+CLSLA+K+EET VP ++DLQVED KFVFEAKTI+RME+LV++TL W++ +TP SF+DY V + G++ + R R +L+ F+ + PS +A A + V + E+ ++ EK L +++ +++V+ C L+ L + +G+ S+ ++ + V VP SP GV+ Sbjct: 143 QLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVD--KISGHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETEC-IDEEKALSSLIYVKQERVKRCLNLMRSLTGEENVRGT-SLSQEQARVAVRAVPASPVGVL 320
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3) HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25 Identity = 64/153 (41.83%), Postives = 90/153 (58.82%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGV--EYEKQLLNILGTDKDKVEHCSKLIMQLA 453 QL AVACLSLAAK+EE VP L D QV +K++FEAKTI+RME+LVLS L W++ VTP F+ + + G F+ I+LS I ++SF++Y PS +A A +L V + S V +E G K+K+ C +L+ +A Sbjct: 128 QLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANELPSLSSVVNPHESPETWCDGLSKEKIVRCYRLMKAMA 280
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23 Identity = 66/176 (37.50%), Postives = 101/176 (57.39%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSL--GVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQGSQSIKRKFGSITVPVV 522 QL VACLSLAAK+EET P LDLQV + ++VF+A+TI RMEI+VL+TL+W+M VTP +++ + + + + E + RC I+LS + + F+++ PS +A A L VV + L G E L + DKD V C + + ++A +Q + +T PV+ Sbjct: 152 QLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNRITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVADGGRVLDFGGVLESSKLPV---DKDNVGRCHQAMQEMALVMQNSTASPSDSLCYDMTNPVL 324
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23 Identity = 56/151 (37.09%), Postives = 91/151 (60.26%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQL-LNILGTDKDKVEHCSKLIMQL 450 QL AV CLSLAAK+EET VP +LDLQ+ED +++FE +TI RME+LVL L W++ +TP +F+ + G E + + ++ L+ I D+ F+ + PS +A A +L I + +++ + I+G D++ + C +L+ QL Sbjct: 161 QLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKVDPNGKHIRELIHQATQVTLATIHDTEFLDHCPSSIAAAAVLCASSEIMQLVSIDHGTLVSWRIIGLDEEAIIRCYRLMQQL 311
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23 Identity = 76/192 (39.58%), Postives = 108/192 (56.25%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQV-------EDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQG---SQSIKRKFGSITVPVVPGSPNGVM 546 +LAAVAC++LAAKVEET+VP+LLDLQ+ + +VFE KT++RME+LVLS L W+M+PVTPLS+L L G L CD LL+ + D + ++ PS A A +L G + E LL ++ KD++ C+K+I + A G KRK G+ + P SP+GV+ Sbjct: 125 RLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQ------PLLGTAHAARLHHCDTALLALMPDWRWPRHRPSAWAAAALLATAGWCGGGGGDDAE--LLALIDAPKDEMAECAKIISEEAAAAAAGGIVIGGENKRK-GAAGLYSAPASPSGVI 307
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22 Identity = 72/182 (39.56%), Postives = 101/182 (55.49%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQGSQSIKRKFGSITVPVVPGSPNGVM 546 QL AVACLSLAAK+EET VP LDLQV + ++VFEAKTIQRME+LVLSTL+W+M VTP S++DY +R L ++L + + + PS +A A VV ++ +K+++ HC ++I Q E + + S S R F S + +P SP GV+ Sbjct: 149 QLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFRPSEIAAAVAAAVVGEEHAAFS-----------HVNKERMSHCQEVI-QAMELIHPKPS-SPSRVFVSSS---IPRSPTGVL 314
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22 Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSL----GVEYEKQLLNILGTDKDKVEHCSKLIMQ 447 QL VACLSLAAK+EE+ P LLDLQ+E +F+FE +TIQRME++VL L W++ VTP +F+D+ +G G R +I+LSAI + F+ + S MA A +L V +++ V E +G ++++ C +L+ + Sbjct: 170 QLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRSSRILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPAAMSHRSSVSSESAASWCIGLTEERISSCYQLLQR 322 The following BLAST results are available for this feature:
BLAST of FC932112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932112 ID=FC932112; Name=FC932112; organism=Citrus clementina; type=EST; length=712bpback to top |