FC932112

Overview
NameFC932112
Unique NameFC932112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4564 contig Ccv1_Contig4564:614..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 7.466e-47
Identity = 95/168 (56.55%), Postives = 126/168 (75.00%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQL-----AEQVQGQGSQSIK 489
            QL +VACLSLAAKVEETQVPLLLD QVE+ K+VFEAKTIQRME+L+LSTL+WKM+ +TP+SF+D+I+R LGLK    W+FL +C R+LLS ISDS F+ YLPSV+A ATM+ +++ ++    + Y+  LL +L   K+KV+ C  LI+QL       Q+Q Q S+  K
Sbjct:  133 QLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVDRIGLQIQIQSSKKRK 300          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.104e-41
Identity = 80/149 (53.69%), Postives = 116/149 (77.85%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQ 447
            QL AVA LSLAAKVEE QVPLLLDLQVE+ +++FEAKTIQRME+L+LSTLQW+M+PVTP+SF D+I+R  G K +   +F ++C+R+L+S I+D+ FM+Y PSV+A A M+ V + ++    VEY+ Q+  +L  +++KV  C +L+++
Sbjct:  142 QLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYELLLE 290          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 79/148 (53.38%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIM 444
            QL A+ACLSLAAKVEE +VP LLD QVE+ ++VFEAKTIQRME+LVLSTL W+M+PVTP+SF D+I+R    K +   EFL RC+ +LLS I DS F+ + PSV+A A M+ V+++++      Y+ QL+ +L  D +KV  C +L++
Sbjct:  132 QLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVL 279          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 72/182 (39.56%), Postives = 115/182 (63.19%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQGSQSIKRKFGSITVPVVPGSPNGVM 546
            QL AV+CLSLA+K+EET VP ++DLQVED KFVFEAKTI+RME+LV++TL W++  +TP SF+DY V    + G++    + R  R +L+      F+ + PS +A A  + V  + E+   ++ EK L +++   +++V+ C  L+  L  +   +G+ S+ ++   + V  VP SP GV+
Sbjct:  143 QLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVD--KISGHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETEC-IDEEKALSSLIYVKQERVKRCLNLMRSLTGEENVRGT-SLSQEQARVAVRAVPASPVGVL 320          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 64/153 (41.83%), Postives = 90/153 (58.82%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGV--EYEKQLLNILGTDKDKVEHCSKLIMQLA 453
            QL AVACLSLAAK+EE  VP L D QV  +K++FEAKTI+RME+LVLS L W++  VTP  F+ +    +   G     F+     I+LS I ++SF++Y PS +A A +L V   + S   V   +E       G  K+K+  C +L+  +A
Sbjct:  128 QLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANELPSLSSVVNPHESPETWCDGLSKEKIVRCYRLMKAMA 280          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 66/176 (37.50%), Postives = 101/176 (57.39%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSL--GVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQGSQSIKRKFGSITVPVV 522
            QL  VACLSLAAK+EET  P  LDLQV + ++VF+A+TI RMEI+VL+TL+W+M  VTP +++ + +  +     +  E + RC  I+LS +  + F+++ PS +A A  L VV +    L  G   E   L +   DKD V  C + + ++A  +Q   +         +T PV+
Sbjct:  152 QLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNRITSELISRCTEIILSTMKATVFLRFRPSEIATAVALSVVADGGRVLDFGGVLESSKLPV---DKDNVGRCHQAMQEMALVMQNSTASPSDSLCYDMTNPVL 324          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 56/151 (37.09%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQL-LNILGTDKDKVEHCSKLIMQL 450
            QL AV CLSLAAK+EET VP +LDLQ+ED +++FE +TI RME+LVL  L W++  +TP +F+      +   G    E + +  ++ L+ I D+ F+ + PS +A A +L     I   + +++   +   I+G D++ +  C +L+ QL
Sbjct:  161 QLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKVDPNGKHIRELIHQATQVTLATIHDTEFLDHCPSSIAAAAVLCASSEIMQLVSIDHGTLVSWRIIGLDEEAIIRCYRLMQQL 311          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 76/192 (39.58%), Postives = 108/192 (56.25%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQV-------EDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQG---SQSIKRKFGSITVPVVPGSPNGVM 546
            +LAAVAC++LAAKVEET+VP+LLDLQ+        +  +VFE KT++RME+LVLS L W+M+PVTPLS+L        L G      L  CD  LL+ + D  + ++ PS  A A +L          G + E  LL ++   KD++  C+K+I + A      G       KRK G+  +   P SP+GV+
Sbjct:  125 RLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQ------PLLGTAHAARLHHCDTALLALMPDWRWPRHRPSAWAAAALLATAGWCGGGGGDDAE--LLALIDAPKDEMAECAKIISEEAAAAAAGGIVIGGENKRK-GAAGLYSAPASPSGVI 307          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 72/182 (39.56%), Postives = 101/182 (55.49%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVQGQGSQSIKRKFGSITVPVVPGSPNGVM 546
            QL AVACLSLAAK+EET VP  LDLQV + ++VFEAKTIQRME+LVLSTL+W+M  VTP S++DY +R L                ++L     +  + + PS +A A    VV    ++               +K+++ HC ++I Q  E +  + S S  R F S +   +P SP GV+
Sbjct:  149 QLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFRPSEIAAAVAAAVVGEEHAAFS-----------HVNKERMSHCQEVI-QAMELIHPKPS-SPSRVFVSSS---IPRSPTGVL 314          
BLAST of FC932112 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 QLAAVACLSLAAKVEETQVPLLLDLQVEDIKFVFEAKTIQRMEILVLSTLQWKMNPVTPLSFLDYIVRGLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIESSL----GVEYEKQLLNILGTDKDKVEHCSKLIMQ 447
            QL  VACLSLAAK+EE+  P LLDLQ+E  +F+FE +TIQRME++VL  L W++  VTP +F+D+    +G  G        R  +I+LSAI +  F+ +  S MA A +L  V    +++     V  E      +G  ++++  C +L+ +
Sbjct:  170 QLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRSSRILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPAAMSHRSSVSSESAASWCIGLTEERISSCYQLLQR 322          
The following BLAST results are available for this feature:
BLAST of FC932112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CCD31_ARATH7.466e-4756.55Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD32_ARATH2.104e-4153.69Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD33_ARATH8.839e-4053.38Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD21_ARATH1.847e-2939.56Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD11_ARATH3.605e-2541.83Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD23_ORYSJ5.756e-2337.50Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]
CCD12_ORYSJ5.756e-2337.09Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD32_ORYSJ7.518e-2339.58Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ORYSJ1.675e-2239.56Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD11_ORYSJ1.675e-2237.91Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionC34204G06EF PostHarveN Citrus clementina cDNA clone C34204G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932112 ID=FC932112; Name=FC932112; organism=Citrus clementina; type=EST; length=712bp
CAACTAGCTGCCGTGGCTTGTCTCTCGCTTGCTGCCAAAGTGGAGGAGAC
ACAAGTGCCCCTCTTATTAGACCTGCAAGTGGAGGATATCAAATTTGTAT
TTGAGGCCAAAACTATCCAGAGGATGGAGATTTTGGTGCTCTCCACGCTT
CAATGGAAGATGAATCCTGTAACCCCTCTTTCTTTTCTTGATTACATTGT
CAGGGGACTTGGGCTTAAGGGTTATCTCTGTTGGGAGTTTCTCAAGAGAT
GCGACCGTATCCTTCTTTCTGCAATTTCAGATTCTAGTTTTATGCAATAT
CTCCCTTCTGTAATGGCTAATGCTACAATGCTACACGTTGTCCAAAATAT
TGAATCCTCTCTTGGTGTCGAATATGAGAAGCAACTATTGAACATTCTCG
GTACCGATAAGGACAAGGTAGAGCATTGTAGTAAGCTGATAATGCAATTG
GCAGAACAAGTCCAGGGGCAGGGCAGCCAATCCATTAAGCGCAAATTTGG
TTCGATTACTGTTCCAGTAGTTCCAGGCAGCCCAAATGGTGTAATGGATG
TGTCGTTTAGCTCGTCAGATAGCTCAAACGATTCATGGTCCGTGGCATCG
TCTGTGTCTTCCTCACCCGAGCCACTGTCCAAGAAGAACAGATCTCAGGC
TCAGGATCACGATCAGGATCAGCTCCTCCTACAGGGTGCCACGCCAGAAT
TTCTTACTATTC
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