FC932116

Overview
NameFC932116
Unique NameFC932116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15453 contig Ccv1_Contig15453:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 81/142 (57.04%), Postives = 97/142 (68.31%), Query Frame = 3
Query:  234 MQGVVLNPS-YSR-PHQTLDPPSCSRPASKSTKSFFGERVS--LTRWRNPVCHSSCRLPLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            MQ + LNP+  SR P Q +DP S S       +    +R    + R  NP+     R  L  ++   R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIE
Sbjct:    1 MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRF-LSSRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIE 141          
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.182e-23
Identity = 67/133 (50.38%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  276 QTLDPPSCSRPA---SKSTKSFFGERVSLTRWRNPVCHSSCRLPLIRKRGAARRN----VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            QT   P  +  A   S +T S    +V+   W +  C SS   P  R   A        V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIE
Sbjct:    2 QTTTVPMAAAAAVAPSTTTSSSASFKVAAYAWSS--CRSSSS-PATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIE 131          
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.729e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  471 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIE 140          
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  459 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIE
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIE 141          
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 3
Query:  492 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIE 96          
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  486 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIE
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIE 94          
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  438 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIE 284          
BLAST of FC932116 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  438 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 647
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIE 284          
The following BLAST results are available for this feature:
BLAST of FC932116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NIFU2_ARATH3.358e-3257.04NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ2.182e-2350.38NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH1.729e-2079.66NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ARATH9.188e-1458.73NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU_ANASL5.042e-1260.38Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
YUTI_BACSU8.600e-1253.70Putative nitrogen fixation protein yutI OS=Bacillu... [more]
NIFU_ANASP8.600e-1249.33Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ8.600e-1249.33Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
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Properties
Property NameValue
Genbank descriptionC34204G10EF PostHarveN Citrus clementina cDNA clone C34204G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932116 ID=FC932116; Name=FC932116; organism=Citrus clementina; type=EST; length=649bp
GGAGACAAAATGCATTCGTTCATAGATTCCAGCAACTAATCACAAAGCGC
ACAAAAAAAAAAAAAAAAAAACAAAGACTGCGCCAACCGCCCGCGACCAC
GCGTAACGAAAGCAAAATAAAACAGGAACACAGATCGATTCAATTAATCG
TTAAACCATCAATTTTTATCAAATCGAATCCCCTGAAAGGAAAAAAAAAA
AAAGTATACACCCGAAGAAATACAAAGAGAAAGATGCAAGGCGTTGTGTT
GAACCCATCTTACAGTCGCCCTCACCAAACCCTAGACCCTCCTTCTTGTT
CGCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAACGAGTTTCG
CTTACGAGGTGGCGGAATCCGGTGTGTCACAGCTCGTGTCGGTTACCGCT
GATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGGCTGTGGCTA
CTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAATATTGAAAGT
GTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGGAAATGTGGC
ATTACATGAGATTGATGGCAACGTTGTACGATTGAAGCTACAGGGAGCAT
GTGGGTCTTGCCCCAGTTCTGTTATGACGATGAAGATGGGTATTGAGCG
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