FC932129

Overview
NameFC932129
Unique NameFC932129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig462 contig Ccv1_Contig462:15..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932129 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.848e-48
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1
Query:  154 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMPLNHKVRAH 444
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREM LNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of FC932129 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  154 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMPLNHKVRA 441
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREM LNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of FC932129 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  154 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMPLNHKVRA 441
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of FC932129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI7.848e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.262e-2154.81Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI4.059e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionC34204H12EF PostHarveN Citrus clementina cDNA clone C34204H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932129 ID=FC932129; Name=FC932129; organism=Citrus clementina; type=EST; length=666bp
GTCCTCACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATA
GCTACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGCAGCACTGTACAGAA
ACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAA
ACAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGC
TGATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCAC
CCTTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGG
CCTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCC
CATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAG
CAGAGCTTCGAGAGATGCCGTTGAACCACAAAGTCAGGGCACACTAGGGA
GTGGCCGCGCATGGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTA
AGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTAAGTCTTTGCTGTT
GTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCATGAT
TTTGTCTATTAACTTGTCAAATAAAGTAAAGAATTCCTGGAAAAAAAAAA
AAAAAAAAAAAAAAAA
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