FC932138
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62 Identity = 128/175 (73.14%), Postives = 131/175 (74.86%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525 QGVLTPGRVRLLLHRGTPCF CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK SKAPKIQRLVTPLTL EYQKLLA+RLKEQR+RRSESLAKKRSRL Sbjct: 65 QGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3) HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62 Identity = 128/175 (73.14%), Postives = 131/175 (74.86%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525 QGVLTPGRVRLLLHRGTPCF CIVSPDLSVLNLVIVKKG DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTL +YQKLLA+RLKEQR+RRSESLAKKRSRL Sbjct: 65 QGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2) HSP 1 Score: 236.498 bits (602), Expect = 1.025e-61 Identity = 126/175 (72.00%), Postives = 131/175 (74.86%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525 QGVLTPGRVRLLLHRGTPCF CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTL +YQKLLA+RLKEQR+RRSESLAKKRSRL Sbjct: 65 QGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 2.895e-48 Identity = 112/175 (64.00%), Postives = 119/175 (68.00%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525 QGVLTPGRVRLLL+RGTPCF CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+ + L+ KEDDVRKYVNT FTTK K SKAPKIQRLVTPLTL EYQKLLA+RLKEQRE+RSESLAKKRSRL Sbjct: 20 QGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRL 189
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36 Identity = 90/172 (52.33%), Postives = 105/172 (61.05%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVI++KGE D+PGLTD+ PR GPKRAS+IRKLFNLSKEDDVR+YV RR T + K +KAPKIQRLVTP L EY KLLA RLKE +E+R E +AK+R Sbjct: 65 QGVLTNGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36 Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP L EY KLLA R+KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36 Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP L EY KLLA R+KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36 Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP L EY KLLA R+KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36 Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K +KAPKIQRLVTP L EY KLLA R+KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36 Identity = 93/173 (53.76%), Postives = 105/173 (60.69%), Query Frame = 1 Query: 1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516 QGVLT GRVRLLL +G C+ CIV +LSVLNLVIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R K GKK +KAPKIQRLVTP L EY KLLA R+KE +E+R E +AK+R Sbjct: 65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232 The following BLAST results are available for this feature:
BLAST of FC932138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932138 ID=FC932138; Name=FC932138; organism=Citrus clementina; type=EST; length=691bpback to top |